GROMACS version: 2018
GROMACS modification: No
I have simulated a membrane system using PBC and without giving any command for the removal of the center of mass in the mdp file. I would like to know generally for the analysis of this system, specifically the RDF and MSD analysis tools of GROMACS, should I use trjconv to convert the trajectory, and if so, which steps should I go through.
Thank you very much for your help.