# Analyze MD

**URL:** <https://gromacs.bioexcel.eu/t/analyze-md/5350>\
**Category:** User discussions\
**Created:** [December 2, 2022, 8:14am UTC](https://gromacs.bioexcel.eu/t/analyze-md/5350 "2022-12-02T08:14:19Z")\
**Posts on this page:** 1\
**Page:** 1

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**Author:** ![Khadijah5780](https://avatars.discourse-cdn.com/v4/letter/k/ebca7d/32.png) [@Khadijah5780](https://gromacs.bioexcel.eu/u/Khadijah5780)\
**Post date:** [December 2, 2022, 8:14am UTC](https://gromacs.bioexcel.eu/t/analyze-md/5350/1 "2022-12-02T08:14:19Z")

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GROMACS version:  
GROMACS modification: Yes/No

Hi,

I am done running the md simulation until the end of production md following this tutorial : [Protein-Ligand Complex](http://www.mdtutorials.com/gmx/complex/08_MD.html) by Justin Lemkul. But, do I need to follow the analysis part in that tutorial? and if I want to analyze in Desmond by SID like this tutorial ([3. Molecular Dynamic Simulation Result Analysis on Desmond by Simulation Interaction Diagram (SID) - YouTube](https://www.youtube.com/watch?v=-vGylpeuKlU&t=30s)), what files do I need to save as output?

Really appreciate any help, thank you.