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gmx_clusterByFeatures - Features-based conformational clustering from MD Simulations
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0
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54
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July 7, 2025
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Gmx make_ndx - index Ca and H instead of N and H
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0
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19
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June 22, 2025
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AWH multiple .xvg files analysis
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1
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37
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June 5, 2025
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Unusual RMSD of ligand-protein
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6
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146
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May 23, 2025
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ERROR 1 [file dd.itp, line 198]: No default Proper Dih. types
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0
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27
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May 19, 2025
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Fatal error: Residue 175 named GLU of a molecule in the input file was mapped to an entry in the top
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0
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27
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May 18, 2025
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Atom C1 not found in building block 1MET while combining tbp and trp
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0
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69
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May 18, 2025
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Entropy calculation output
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3
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824
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May 16, 2025
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gorder: Comprehensive tool for calculating lipid order parameters from molecular simulations
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0
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52
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May 12, 2025
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Interpretation of Nonzero 14-LJ and 14-Coul Terms for Nonbonded Groups
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7
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53
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May 8, 2025
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listRanges does not have a first element with value 0
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3
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282
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April 12, 2025
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SMD output files and interpretation
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0
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16
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May 2, 2025
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The options about xmax and xmin for gmx densmap
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1
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44
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May 2, 2025
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Rotating protein in trajectory
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6
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76
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May 1, 2025
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Protein-Lipid system, protein keeps flipping or jumping
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2
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74
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April 25, 2025
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Is an RMSD value above 0.36 nm (apo-form) and 0.4 to 0.5 nm (complex-form) is acceptable?
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0
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30
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April 23, 2025
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Debye Method Implementation
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0
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39
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April 22, 2025
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Error in docked complex simulation
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1
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39
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April 22, 2025
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Equivalent to the old sas2mat
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0
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18
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April 17, 2025
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GROMACS Result Analysis. Potential Issues?
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7
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234
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April 17, 2025
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PBC Artifacts in 20 bp DNA System
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0
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9
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April 16, 2025
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Topology for janus MoSSe
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0
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14
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April 14, 2025
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For two examples, the eigenvalues obtained from `g_covar` are all zeros
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3
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64
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April 11, 2025
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GROMACS RMSD Analysis: Understanding Non-Zero Initial Values
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2
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97
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April 4, 2025
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Segmentation fault (core dumped) for gmx covar
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5
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39
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April 2, 2025
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Error for protein ligand simulation in gromacs
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0
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27
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April 1, 2025
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How does "-[no]correct (no)" flag works in gmx potential tool?
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10
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161
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March 28, 2025
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MSD curve has a large non-linear part
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5
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93
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March 26, 2025
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How to use gmx polystat for MSID
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3
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43
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March 26, 2025
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Distance between COM HP-beta-cyclodextrin and Gliclazide
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2
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40
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March 24, 2025
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