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Log p calculation
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1
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46
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March 10, 2024
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The probability of hydrogen bond formation and hydrogen bond angle
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2
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71
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March 7, 2024
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RMSD analysis doubt
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4
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49
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March 5, 2024
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MD simulation Statistical analyses for RMSD, Rg and GIbbs FEL
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0
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62
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March 3, 2024
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MSD differs when processing the same trajectory using command gmx_mpi msd
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9
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96
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March 1, 2024
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Gmx_MMPBSA binding energy
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6
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158
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February 29, 2024
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Generate Histogram of HBonds
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0
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50
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February 28, 2024
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The calculation of viscosity, the direction of viscosity
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1
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71
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February 28, 2024
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High RMSD value but its stable
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2
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185
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February 26, 2024
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Π-π interaction
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1
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81
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February 26, 2024
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Interpreting Electrostatic Interactions
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0
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114
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February 26, 2024
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Angle calculation by gmx gangle
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0
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106
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February 23, 2024
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Calculating the volume occupy by water
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0
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81
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February 23, 2024
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Slice simulation box in Z direction and compute mobility of water in seperate slices
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2
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76
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February 21, 2024
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Rotational Kinetic Energy after Electric field
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0
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66
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February 20, 2024
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Gmx selection of COM residue
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0
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84
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February 20, 2024
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Simulation breaks the side chain of some residue gromacs
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4
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180
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February 15, 2024
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PCA of replicates
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3
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87
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February 15, 2024
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Root mean square inner product (RMSIP) and PCA
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3
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103
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February 15, 2024
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Nature of H bonding in gromacs
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4
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124
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February 15, 2024
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Interactions between compounds
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1
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53
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February 12, 2024
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What do I do when I don't see density in my gromacs energy selection?
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2
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96
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February 8, 2024
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What do I do when I don't see density in my gromacs energy selection
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2
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84
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February 8, 2024
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Nmtraj issue
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3
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91
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February 8, 2024
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Perform WHAM with rotation output file from enforced rotation md simulations for umbrella sampling
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5
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485
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February 7, 2024
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How to compute the number of hydrogen bonds per molecule in a pure water system: gmx hbond
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0
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70
|
February 7, 2024
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PCA: how to make 2 2d-PCA scatter plots from both wild-type and mutant structures into one figure?
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5
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1583
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February 4, 2024
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How does gmx hbond work?
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6
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3157
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January 30, 2024
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Unevern spikes in RMSD graphs after MD simulations
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5
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480
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January 29, 2024
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Some question about DNA fitting
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3
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93
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January 28, 2024
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