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Importance of .tpr file for generating trajectories
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11
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181
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May 10, 2022
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Distance between water molecules and residues
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1
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74
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May 5, 2022
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Xvg file format including non-continuous numbers
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2
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63
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May 4, 2022
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Calculating surface tension of lipid bilayer using gmx energy
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3
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151
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May 4, 2022
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How to obtain pull force profile after a steered MD simulation?
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4
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82
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May 3, 2022
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Controlling the number of points calculated by gmx saxs
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10
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159
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April 26, 2022
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Gmx rdf selection options
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2
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170
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April 23, 2022
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Trajectory extraction of multimeric system
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4
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124
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April 22, 2022
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GMX Trajectory not extracting force or velocities
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4
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165
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April 21, 2022
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Gmx density: pbc implication
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0
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66
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April 14, 2022
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Finding the Center of Mass coordinate for a lipid molecule
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7
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134
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April 11, 2022
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Calculation of centroid distance
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2
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70
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April 11, 2022
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Some narrow spike-like peaks in the addition to the normal peaks in the RDF
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1
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72
|
April 11, 2022
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Can we convert xtc to cms of desmond for analysis
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1
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143
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April 10, 2022
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MD Analysis
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2
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77
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April 8, 2022
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MD analysis Problem
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2
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69
|
April 8, 2022
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Gmx energy enthalpy calculation
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3
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205
|
April 8, 2022
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Clustering of a protein with 2 chains
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2
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117
|
April 8, 2022
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Extraction of trajectory for multimeric system
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9
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187
|
April 8, 2022
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Comparison of stability of simulated systems
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2
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71
|
April 5, 2022
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How to obtain the double precision coordinate file as input for the normal mode analysis
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2
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69
|
April 5, 2022
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Analysis of interaction between GOLD and protein
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1
|
80
|
March 31, 2022
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Trouble with .tpr reference stucture for gmx rms
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0
|
70
|
March 30, 2022
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Distances with respect to principal axis
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3
|
99
|
March 30, 2022
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How to compile g_density3Darea with the gromacs-2022
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2
|
80
|
March 22, 2022
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Gmx saxs reports intensities at different wavelengths for two different systems
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0
|
84
|
March 12, 2022
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Perform WHAM with rotation output file from enforced rotation md simulations for umbrella sampling
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0
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73
|
March 11, 2022
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Interpreting pressure Data in .edr with gmx energy as compared to Excel
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4
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137
|
March 10, 2022
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Calculating solubility parameter
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1
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165
|
March 7, 2022
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SASA Calculating for protein-ligand
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4
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160
|
March 3, 2022
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