Unevern spikes in RMSD graphs after MD simulations

gromacs_amature
Thu, 09 Mar 2023 07:42:21 +0000
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GROMACS version:GROMACS - gmx rms, VERSION 5.1.4

GROMACS modification: No
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I followed the MD run tutorial from Gromacs. I have also applied position restrain for energy minimization. I checked the log files no load dynamic errors. Why this happens?
The other runs have no peaks and attains threshold after gradual increase.
command used for rmsd: gmx_mpi rms -s filename.tpr -f filename.xtc -o rmsd.xvg -n index.ndx

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