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'topol' does not exist or is not accessible
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2
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2213
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December 6, 2025
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Illegal memory access error #700 CUDA
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2
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146
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December 3, 2025
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Box explodes using NPT.mdp
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2
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91
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November 26, 2025
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Query regarding making all .mdp files for ionization, equllibration, energy minimization
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2
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45
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November 25, 2025
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Keywords in command line for getting good performance in gromacs
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3
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381
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November 23, 2025
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Query:Reagrding using the multiple nodes's GPU or CPU to run MD production step in gromacs
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4
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89
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November 20, 2025
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Position restraints causing mdrun to stall on step 0
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3
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78
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November 17, 2025
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GROMACS can't find files that are in the working directory
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3
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95
|
November 14, 2025
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CUDA error #218
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3
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319
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November 13, 2025
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Segfault with ntmpi >2 with 2 GPUs
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6
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71
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November 12, 2025
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Production MD stop in 23829100 step
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3
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74
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November 11, 2025
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Non-Bonded parameters definition not working
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2
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56
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November 10, 2025
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Using -membed option in gromacs
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5
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391
|
November 7, 2025
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Has anyone successfully used GROMACS 2023 with 5070Ti GPUs?
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3
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185
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October 30, 2025
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Topology files with packmol
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6
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756
|
October 20, 2025
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Change in Volume Fluctuations / Compressibility for TIP4P/2005 Between GROMACS 2016 and 2024
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6
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93
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October 16, 2025
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GROMACS 2025.3 CUDA 13 RTX 5070 Ti Fails on Simulations
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2
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160
|
October 14, 2025
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what should do with zink-protein.pdf to get topology file?
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5
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92
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October 7, 2025
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Requesting for claud computing system for md production
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2
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37
|
October 7, 2025
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GROMACS 2019.6 job running very slow (5 ns/day) with GPU SLURM script. How to improve performance?
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1
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94
|
October 7, 2025
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Help: RTX 5080 (Blackwell, Compute Capability 12.1) + WSL2 + CUDA 13.0 “No Kernel Image Available”
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2
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384
|
October 5, 2025
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How should I choose the box size for nanodisc simulations?
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1
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60
|
October 3, 2025
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How to set up protein–peptide complex simulation in GROMACS: peptide as ligand or whole complex?
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1
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128
|
September 29, 2025
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Using H2O2 as a solvent for MD simulation
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3
|
101
|
September 19, 2025
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Energy drift in NVE (multiple time step algorithm)
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2
|
80
|
September 19, 2025
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Indexing particular residues in GROMACS
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0
|
58
|
September 19, 2025
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Pressure scaling more than 1%. This may mean your system is not yet equilibrated
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5
|
295
|
September 15, 2025
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RMSD graph after protein protein md simulation
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4
|
144
|
September 8, 2025
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|
SARS-CoV-2 RNA simulation
|
|
0
|
38
|
September 8, 2025
|
|
Simulation with large number of particles
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|
4
|
84
|
September 4, 2025
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