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Production MD stop in 23829100 step
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3
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48
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November 11, 2025
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Non-Bonded parameters definition not working
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2
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43
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November 10, 2025
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Using -membed option in gromacs
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5
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315
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November 7, 2025
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Has anyone successfully used GROMACS 2023 with 5070Ti GPUs?
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3
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134
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October 30, 2025
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Topology files with packmol
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6
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710
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October 20, 2025
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Change in Volume Fluctuations / Compressibility for TIP4P/2005 Between GROMACS 2016 and 2024
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6
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78
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October 16, 2025
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GROMACS 2025.3 CUDA 13 RTX 5070 Ti Fails on Simulations
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2
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104
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October 14, 2025
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what should do with zink-protein.pdf to get topology file?
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5
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65
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October 7, 2025
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Requesting for claud computing system for md production
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2
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37
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October 7, 2025
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GROMACS 2019.6 job running very slow (5 ns/day) with GPU SLURM script. How to improve performance?
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1
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78
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October 7, 2025
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Help: RTX 5080 (Blackwell, Compute Capability 12.1) + WSL2 + CUDA 13.0 “No Kernel Image Available”
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2
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247
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October 5, 2025
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How should I choose the box size for nanodisc simulations?
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1
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36
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October 3, 2025
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How to set up protein–peptide complex simulation in GROMACS: peptide as ligand or whole complex?
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1
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96
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September 29, 2025
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Using H2O2 as a solvent for MD simulation
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3
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81
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September 19, 2025
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Energy drift in NVE (multiple time step algorithm)
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2
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59
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September 19, 2025
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Indexing particular residues in GROMACS
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0
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46
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September 19, 2025
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Pressure scaling more than 1%. This may mean your system is not yet equilibrated
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5
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210
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September 15, 2025
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RMSD graph after protein protein md simulation
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4
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118
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September 8, 2025
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SARS-CoV-2 RNA simulation
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0
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30
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September 8, 2025
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Simulation with large number of particles
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4
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54
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September 4, 2025
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How to fix negative pressure?
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9
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1459
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August 28, 2025
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How to generate topology and .itp files for succinic acid and Zn²⁺ in GROMACS using OPLS-AA?
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0
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36
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August 28, 2025
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Pull code on a long filament
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7
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93
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August 12, 2025
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Mdrun log file error Large VCM(group MEMB)
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1
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31
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August 11, 2025
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Computing codes of GROMACS for free
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4
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109
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August 3, 2025
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Minimization of a membrane-peptide complex
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0
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46
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August 2, 2025
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Protein come out of the box but trjconv command didn't fix the problem
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10
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4437
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August 2, 2025
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I cannot follow the martini tutorial Parametrization of a new small molecule
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11
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457
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July 31, 2025
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Problem with gromacs script generetated with charmm-gui
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3
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61
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July 30, 2025
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Distance restrained in my protein amino acids with Zn ion present in it
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0
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14
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July 30, 2025
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