Topics tagged pull-code

Topic	Replies	Views	Activity
An error occurred in the pull code to implement the methane gas compression process under a certain User discussions pull-code	0	194	December 8, 2023
Pulling seven reaction coordinates User discussions pull-code	17	1033	August 22, 2023
PMF of a small molecule across a slab that has vapor-liquid interface User discussions mdp-parameters , awh , umbrella-sampling , pull-code	1	413	August 21, 2023
Pulling with orientation and position constraints on particles User discussions pull-code	0	285	August 8, 2023
Pulling a simulated AFM tip on to lipid bilayers User discussions pull-code	0	293	June 19, 2023
How to put constraints on MARTINI beads User discussions pull-code , constraint-algorithms	0	341	June 19, 2023
Pull code distance restraint User discussions pull-code	2	1048	June 7, 2023
Constraining two water droplets at constant distance between their COMs using pull code User discussions mdp-parameters , umbrella-sampling , pull-code	33	1127	May 9, 2023
Pull_f and Pull_X graphs showing sharp peaks User discussions pull-code	2	368	April 18, 2023
How to apply pulling force in one helix of a single chain globular protein to perform SMD? User discussions pull-code	10	1287	March 24, 2023
Pull code error in Gromacs version 2019.6 User discussions pull-code	6	2703	November 22, 2022
Negative force from pulling simulation User discussions pull-code	5	971	November 16, 2022
Steered MD simulation of ligand through membrane protein User discussions pull-code	2	943	February 25, 2022
How to get the velocity of the COM of a pulling group? User discussions mdp-parameters , analysis-tools , pull-code	6	1009	February 22, 2022
How to pull a molecule across the bilayer? User discussions mdp-parameters , pull-code	5	1522	January 25, 2022
Steered MD pulling rate does not result in desired final pulling distance User discussions pull-code	2	755	November 22, 2021
Pulling a ligand out of the active site of a protein for PMF analysis User discussions pull-code	3	623	October 22, 2021
How would you avoid the case that an SMD stops if d > L/2? User discussions mdp-parameters , pull-code	5	576	September 18, 2021
When pulling a group of a simulation system, how does each atom feel the pulling force? User discussions pull-code	2	1461	September 15, 2021
Constant-force vs constant velocity User discussions mdp-parameters , pull-code	0	519	September 12, 2021
How to pull a molecule across a bilayer with fixed boundaries? User discussions pull-code	14	1659	June 25, 2021
Pull Code operation User discussions mdrun , pull-code	0	401	April 30, 2021
How does Pull code apply potential? User discussions pull-code	1	430	March 25, 2021