Can I print half time step velocities of a run with leap-frog algorithm?
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1
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12
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March 28, 2024
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How to add the isoleucine and phytol tail using the best software?
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0
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17
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March 27, 2024
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Core-shell model definition in Gromacs
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0
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18
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March 26, 2024
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Fatal error while doing Protein-ligand simulation using GROMACS 2023
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3
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327
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March 26, 2024
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Error energy minimization - Martini
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1
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30
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March 22, 2024
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EM converge before reaching the target steps, NVT indicated segmentation fault
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5
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27
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March 21, 2024
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Lipid self-asssembly artifacts due to single axis elongation
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1
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46
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March 20, 2024
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Coarse-grained md simulatioin
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2
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49
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March 14, 2024
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How to perform a triplicate molecular dynamics simulation?
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1
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43
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March 12, 2024
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How to use brownian dynamics with gromacs
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2
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65
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March 12, 2024
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L-L Extraction: Interface Simulation
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0
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39
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March 11, 2024
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Why are non-water solvents in the aminoacids.rtp in gromos54a8?
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2
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52
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March 11, 2024
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Difference observed in protein RMSD between different complexes but protein is same
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26
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143
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March 11, 2024
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Help regarding quenching in gromacs
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0
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33
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March 9, 2024
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Parameterization of an adenylylated tyrosine residue in CHARMM36
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0
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35
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March 7, 2024
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Blow up during NPT equilibration using Berendsen barostat
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3
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69
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March 6, 2024
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Molecular dynamic simulation of alkaloids
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0
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60
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March 2, 2024
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Gmx_MMPBSA binding energy
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6
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101
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February 29, 2024
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Error file itp
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1
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36
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February 28, 2024
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Electrostatic force between virtual interaction sites
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1
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50
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February 25, 2024
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The step of Adding ions in an added ion but the step shows No ions to add, will just copy input
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2
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70
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February 24, 2024
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Membrane Protein Simulation: Do Lipids Inhibit Protein Conformational Changes
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2
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46
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February 21, 2024
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Does Lipid get Displaced Due to Membrane Protein's Open Conformation? Flexible Cell Approach needed?
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3
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67
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February 20, 2024
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MD of ionic supramolecular complex
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1
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43
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February 20, 2024
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Help with simulated annealing of a small peptide
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1
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70
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February 20, 2024
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Error in ion neutralization step
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3
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46
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February 18, 2024
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Simulating a Protein-Ligand dimer
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6
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212
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February 16, 2024
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Tabulated non-bonded interactions
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6
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94
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February 15, 2024
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Having all pairtypes defined in the topology file
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2
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79
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February 15, 2024
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Gromacs initial files to start united-atom PDMS simulations
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0
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53
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February 9, 2024
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