cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON -DCMAKE_INSTALL_PREFIX=/usr/local/gromacs5 -- The C compiler identification is GNU 9.4.0 -- The CXX compiler identification is GNU 9.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for NVIDIA GPUs present in the system -- Number of NVIDIA GPUs detected: 1 CUDA_TOOLKIT_ROOT_DIR not found or specified -- Could NOT find CUDA (missing: CUDA_TOOLKIT_ROOT_DIR CUDA_NVCC_EXECUTABLE CUDA_INCLUDE_DIRS CUDA_CUDART_LIBRARY) (Required is at least version "4.0") -- No compatible CUDA toolkit found (v4.0+), disabling native GPU acceleration -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Detecting best SIMD instructions for this CPU -- Detected best SIMD instructions for this CPU - AVX2_256 -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_WARN_EXTRA -- Performing Test CFLAGS_WARN_EXTRA - Success -- Performing Test CFLAGS_WARN_UNDEF -- Performing Test CFLAGS_WARN_UNDEF - Success -- Performing Test CFLAGS_WARN_REL -- Performing Test CFLAGS_WARN_REL - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_WARN_EXTRA -- Performing Test CXXFLAGS_WARN_EXTRA - Success -- Performing Test CXXFLAGS_WARN_UNDEF -- Performing Test CXXFLAGS_WARN_UNDEF - Success -- Performing Test CXXFLAGS_WARN_REL -- Performing Test CXXFLAGS_WARN_REL - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Looking for rsqrt -- Looking for rsqrt - not found -- Looking for rsqrtf -- Looking for rsqrtf - not found -- Looking for sqrtf -- Looking for sqrtf - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for zlibVersion in /usr/lib/x86_64-linux-gnu/libz.so -- Looking for zlibVersion in /usr/lib/x86_64-linux-gnu/libz.so - found -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Could NOT find Boost (missing: Boost_INCLUDE_DIR) (Required is at least version "1.44.0") Boost >= 1.44 not found. Using minimal internal version. This may cause trouble if you plan on compiling/linking other software that uses Boost against GROMACS. CMake Warning at CMakeLists.txt:546 (message): libxml2 not found. Will build GROMACS without unit-tests. This is not recommended, because the unit-tests help to verify that GROMACS functions correctly. Most likely you are missing the libxml2-dev(el) package. After you installed it, set GMX_BUILD_UNITTESTS=ON. -- Setting build user/date/host/cpu information -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for isfinite -- Performing Test isfinite_compile_ok -- Performing Test isfinite_compile_ok - Success -- Checking for isfinite - yes -- Checking for _isfinite -- Performing Test _isfinite_compile_ok -- Performing Test _isfinite_compile_ok - Failed -- Checking for _isfinite - no -- Checking for _finite -- Performing Test _finite_compile_ok -- Performing Test _finite_compile_ok - Failed -- Checking for _finite - no -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test GMX_CXX11_SUPPORTED -- Performing Test GMX_CXX11_SUPPORTED - Success -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- Try C compiler AVX2 flag = [-march=core-avx2] -- Performing Test C_FLAG_march_core_avx2 -- Performing Test C_FLAG_march_core_avx2 - Success -- Performing Test C_SIMD_COMPILES_FLAG_march_core_avx2 -- Performing Test C_SIMD_COMPILES_FLAG_march_core_avx2 - Success -- Try C++ compiler AVX2 flag = [-march=core-avx2] -- Performing Test CXX_FLAG_march_core_avx2 -- Performing Test CXX_FLAG_march_core_avx2 - Success -- Performing Test CXX_SIMD_COMPILES_FLAG_march_core_avx2 -- Performing Test CXX_SIMD_COMPILES_FLAG_march_core_avx2 - Success -- Enabling 256-bit AVX2 SIMD instructions -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- The GROMACS-managed build of FFTW 3 will configure with the following optimizations: --enable-sse2;--enable-avx -- Using external FFT library - FFTW3 build managed by GROMACS -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Could NOT find BLAS (missing: BLAS_LIBRARIES) -- Using GROMACS built-in BLAS. -- LAPACK requires BLAS -- A library with LAPACK API not found. Please specify library location. -- Using GROMACS built-in LAPACK. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- Could not compile VMD version check -- Using default binary suffix: "" -- Using default library suffix: "" -- Found PythonInterp: /usr/bin/python3.8 (found version "3.8.10") -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_DEPRECATED_REGISTER -- Performing Test HAS_NO_DEPRECATED_REGISTER - Success Downloading: http://gerrit.gromacs.org/download/regressiontests-5.1.5.tar.gz -- [download 100% complete] CMake Error at tests/CMakeLists.txt:57 (message): error: downloading 'http://gerrit.gromacs.org/download/regressiontests-5.1.5.tar.gz' failed status_code: 22 status_string: "HTTP response code said error" log: Trying 130.237.11.134:80... TCP_NODELAY set Connected to gerrit.gromacs.org (130.237.11.134) port 80 (#0) GET /download/regressiontests-5.1.5.tar.gz HTTP/1.1 Host: gerrit.gromacs.org User-Agent: curl/7.66.0 Accept: */* Mark bundle as not supporting multiuse HTTP/1.1 301 Moved Permanently Server: nginx/1.18.0 (Ubuntu) Date: Sat, 25 Jun 2022 13:26:39 GMT Content-Type: text/html Content-Length: 178 Connection: keep-alive Location: https://gerrit.gromacs.org/download/regressiontests-5.1.5.tar.gz Ignoring the response-body [178 bytes data] Connection #0 to host gerrit.gromacs.org left intact Clear auth, redirects to port from 80 to 443Issue another request to this URL: 'https://gerrit.gromacs.org/download/regressiontests-5.1.5.tar.gz' Trying 130.237.11.134:443... TCP_NODELAY set Connected to gerrit.gromacs.org (130.237.11.134) port 443 (#1) ALPN, offering h2 ALPN, offering http/1.1 successfully set certificate verify locations: CAfile: /etc/ssl/certs/ca-certificates.crt CApath: /etc/ssl/certs [5 bytes data] TLSv1.3 (OUT), TLS handshake, Client hello (1): [512 bytes data] [5 bytes data] TLSv1.3 (IN), TLS handshake, Server hello (2): [122 bytes data] [5 bytes data] [5 bytes data] [1 bytes data] TLSv1.3 (IN), TLS handshake, Encrypted Extensions (8): [25 bytes data] [5 bytes data] [1 bytes data] TLSv1.3 (IN), TLS handshake, Certificate (11): [4069 bytes data] [5 bytes data] [1 bytes data] TLSv1.3 (IN), TLS handshake, CERT verify (15): [264 bytes data] [5 bytes data] [1 bytes data] TLSv1.3 (IN), TLS handshake, Finished (20): [52 bytes data] [5 bytes data] TLSv1.3 (OUT), TLS change cipher, Change cipher spec (1): [1 bytes data] [5 bytes data] [1 bytes data] TLSv1.3 (OUT), TLS handshake, Finished (20): [52 bytes data] SSL connection using TLSv1.3 / TLS_AES_256_GCM_SHA384 ALPN, server accepted to use http/1.1 Server certificate: subject: CN=gerrit.gromacs.org start date: Mar 25 10:01:50 2022 GMT expire date: Jun 23 10:01:49 2022 GMT subjectAltName: host "gerrit.gromacs.org" matched cert's "gerrit.gromacs.org" issuer: C=US; O=Let's Encrypt; CN=R3 SSL certificate verify result: certificate has expired (10), continuing anyway. [5 bytes data] [1 bytes data] GET /download/regressiontests-5.1.5.tar.gz HTTP/1.1 Host: gerrit.gromacs.org User-Agent: curl/7.66.0 Accept: */* [5 bytes data] [1 bytes data] TLSv1.3 (IN), TLS handshake, Newsession Ticket (4): [281 bytes data] [5 bytes data] [1 bytes data] TLSv1.3 (IN), TLS handshake, Newsession Ticket (4): [281 bytes data] old SSL session ID is stale, removing [5 bytes data] [1 bytes data] Mark bundle as not supporting multiuse The requested URL returned error: 403 Forbidden Closing connection 1 [5 bytes data] [1 bytes data] TLSv1.3 (OUT), TLS alert, close notify (256): [2 bytes data] -- Configuring incomplete, errors occurred! See also "/home/user/Downloads/gromacs-5.1.5/build/CMakeFiles/CMakeOutput.log". See also "/home/user/Downloads/gromacs-5.1.5/build/CMakeFiles/CMakeError.log".