Hi Justin I had successfully implanted my transmembrane protein into the membrane via CHARMM-GUI as you had suggested (see-thread). Is it possible to take the coordinates of the CHARMM-GUI success and proceed to the GROMACS Step 9 Analysis from the GROMACS Tutorial Membrane Protein: KALP15 in DPPC to analyze this protein-membrane system? (I believe not since I would need several files generated from this Gromacs Tutorial that I was unsuccessful at.) Thanks if you know:) Joel🚀
Membrane Protein system_inflate.gro error generation for an oligomer maybe an inflategro.pl problem?
…for example the .xtc Trajectory Compressed File was not generated during my CHARMM-GUI Gromacs Simulation process, however, this file is needed during the 4.-points of membrane analysis i.e. Density of the Membrane, Lateral Diffusion of Lipids etc… Maybe I could use the .xtc file generated during the Equilibration Stage of Gromacs within CHARMM-GUI, im not sure since I am just not experienced enough .