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How to use the forum
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1
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3700
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October 28, 2020
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About the User discussions category
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0
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2007
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April 24, 2020
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Gmx velacc nonsense?
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0
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3
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March 25, 2025
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Segmentation fault with REMD+GPU--potential bug?
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0
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2
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March 25, 2025
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How do I insert the drug at a certain distance from the membrane by using GROMACS?
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8
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290
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March 25, 2025
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Regarding comm_grps in mdp files for Membrane protein simulation
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1
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10
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March 25, 2025
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Apply constraints to desire molecules
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0
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2
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March 25, 2025
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How to use gmx polystat for MSID
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0
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3
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March 25, 2025
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Interpreting energies and distances
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0
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12
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March 25, 2025
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GPU is not detected
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5
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23
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March 25, 2025
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Improve the performance in gpu
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1
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10
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March 25, 2025
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GAFF or Amber99sb-ildn for simulating small molecule binding with protein containing metal ions
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0
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13
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March 25, 2025
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Fatal error: Failed to lock: annealing.log. Already running simulation?
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2
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10
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March 25, 2025
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How to use the charmm36 force field parameters from CGenFF for ligand?
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2
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167
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March 24, 2025
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Distance between COM HP-beta-cyclodextrin and Gliclazide
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2
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15
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March 24, 2025
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Tabulated non-bonded potentials
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9
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877
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March 24, 2025
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Dynamic POSRES_FC assignment in .mdp
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8
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27
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March 24, 2025
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No default bond types, rykaert bell types and more
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1
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5
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March 24, 2025
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Novice to simulate antibody-drug-conjugate -- unnatural residues
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0
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9
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March 24, 2025
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Issue: Unable to Remove PBC in GROMACS Using trjconv Options
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1
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13
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March 24, 2025
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Newbox generation error
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1
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9
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March 24, 2025
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Help me with the workstation configuration for Gromacs
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2
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12
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March 24, 2025
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MSD curve has a large non-linear part
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3
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17
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March 24, 2025
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Best Practices for Simulating Small Ligand-Protein Complexes in GROMACS?
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0
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19
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March 23, 2025
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Protein Separation in Asymmetric Lipid Bilayer Simulation – Causes and Solutions?
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5
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28
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March 23, 2025
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Ligand leaving binding pocket
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15
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90
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March 23, 2025
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Two simulations on a node don't fully utilize independent GPUs
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0
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5
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March 22, 2025
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Radial MSD and Lateral Diffusion in Spherical Coordinates
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0
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10
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March 22, 2025
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GROMACS cant detect GPU (AMD)
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1
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29
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March 22, 2025
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Segmentration Fault and to small of a timestep problem from a Amber built system
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19
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510
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November 11, 2024
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