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How to use the forum
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1
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3431
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October 28, 2020
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About the User discussions category
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0
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1944
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April 24, 2020
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No curve obtained when opening potential.xvg with xmgrace
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2
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7
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September 18, 2024
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Volume change
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10
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9
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September 18, 2024
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Bumpy energy profile from PMF
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0
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3
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September 18, 2024
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Gromacs error adding a number 1 to an atom
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1
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2
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September 18, 2024
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How to understand the output after pulling force is applied?
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7
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36
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September 18, 2024
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Size of the box is increasing
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1
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6
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September 18, 2024
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MDP files for DNA free energy perturbation (equilibrium)
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0
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4
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September 18, 2024
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How to calculate the number of hydrophobic interactions
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2
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7
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September 18, 2024
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Fetal error in GROMACS
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18
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62
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September 18, 2024
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No such molecule POP1 error during CG simulation minimization step
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3
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6
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September 18, 2024
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Gromacs Hbdons
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0
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5
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September 18, 2024
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Topology mismatch
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3
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5
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September 18, 2024
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Mutating residue, free energy
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3
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24
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September 18, 2024
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Free energy annihilation chromophore in scaffold
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2
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5
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September 18, 2024
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Too many LINCS Warnings in MARTINI Lipid Bilayer simulations
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22
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25
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September 18, 2024
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Absolute binding free energy calculation
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6
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18
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September 18, 2024
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Inserting a modified residue into a protein/DNA chain using pdb2gmx
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30
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1221
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September 17, 2024
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Time evolution of one replica with temperatures from REMD
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3
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303
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September 17, 2024
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My REMD it is giving me 0.0 of probability
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0
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7
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September 17, 2024
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Proteine ligand in gromax with 2 same ligand
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0
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5
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September 17, 2024
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Gromacs 2019.6
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1
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9
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September 17, 2024
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The residues do not have a consistent type
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0
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4
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September 17, 2024
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How to calculate water density after removing PBC?
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4
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16
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September 17, 2024
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Visualizing elastic network proteins
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0
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7
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September 17, 2024
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Create ligand topology file with OPLS force field
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2
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40
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September 17, 2024
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SD integrator vs MD integrator
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5
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44
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September 17, 2024
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How to get .edr file with only .xtc or .tpr?
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4
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11
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September 17, 2024
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Fe2+ and Mn2+ force field parameters
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18
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3638
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September 16, 2024
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