Lipid self-asssembly artifacts due to single axis elongation
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0
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11
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March 18, 2024
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Calculating the system temperature from the velocity information from .gro file
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4
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36
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March 15, 2024
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Mdrun crashes on hydrated protein-ligand system with wdv-type=PME
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0
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30
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March 12, 2024
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How to perform a triplicate molecular dynamics simulation?
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1
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32
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March 12, 2024
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Why do the results of NPT dynamics change so much with the heating rate?
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11
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45
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March 11, 2024
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Blow up during NPT equilibration using Berendsen barostat
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3
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53
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March 6, 2024
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CG-CD1 TRP bond oscillational less than 0.004 fs
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1
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41
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March 6, 2024
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Segmentation fault -error
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2
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61
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March 4, 2024
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Gmx_MMPBSA binding energy
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6
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68
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February 29, 2024
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Tensile test on polymer box
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1
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51
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February 21, 2024
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Help with simulated annealing of a small peptide
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1
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56
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February 20, 2024
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PACKMOL and gmx2pdb
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0
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60
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February 20, 2024
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Implausible values in free energy calculations
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4
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158
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February 16, 2024
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Tabulated non-bonded interactions
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6
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89
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February 15, 2024
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Request for Free Energy Integration Files Using Dummy Atoms
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3
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98
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February 3, 2024
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Issue of High Potential Energy on Running Minimization
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9
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172
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February 1, 2024
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LINCS warning during energy minimizations
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8
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1112
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January 24, 2024
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How to Calculate the linear interaction energy
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17
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2218
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January 20, 2024
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How can we change the pH of a solution?
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1
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131
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January 18, 2024
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Mdp files of Charmm-gui server
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8
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536
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January 18, 2024
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Steered MD settings
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2
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91
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January 16, 2024
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Optimal Trajectory Saving for Accurate H-bond Lifetime Calculation
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0
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74
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January 14, 2024
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Trying to mimic biophysical experiment concentration
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0
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67
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December 25, 2023
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Simulation Breaks the system (separates both the chains of the Antibody)
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10
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798
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December 24, 2023
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How to avoid the error "One or more water molecules cannot be settled"
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0
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123
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December 22, 2023
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RMSD curve of the protein of the lipid bilayer simulation
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0
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123
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December 21, 2023
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Solvation Energy calculation
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34
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535
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December 21, 2023
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Using AWH for bilayer permeability
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15
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458
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December 21, 2023
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Constant pH MD
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0
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151
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December 21, 2023
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Invalid input values
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0
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88
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December 18, 2023
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