|
Problems with freezegrps
|
|
0
|
1
|
July 25, 2021
|
|
Difference in Coulomb interaction energy for a two particle system with and without PBC and PME
|
|
3
|
18
|
July 23, 2021
|
|
Tabulated potentials+MPI
|
|
0
|
5
|
July 22, 2021
|
|
Multidimensional AWH
|
|
3
|
43
|
July 19, 2021
|
|
Simulated annealing production run. How can one plot comparative RMSD plot?
|
|
0
|
12
|
July 13, 2021
|
|
Does freeze-grps speed up MD?
|
|
1
|
38
|
July 11, 2021
|
|
LINCS WARNING followed by termination of NVT JOB
|
|
2
|
14
|
July 9, 2021
|
|
Will vdw cutoffs in the mdp file affect my user-defined interactions?
|
|
1
|
26
|
July 6, 2021
|
|
How to simulate two ligands? My setup doesnt include any polypeptide
|
|
2
|
37
|
July 2, 2021
|
|
Box size fluctuations
|
|
4
|
38
|
June 22, 2021
|
|
'Turning off' interactions
|
|
1
|
34
|
June 16, 2021
|
|
How to predict low temperature structure of ionic liquids using MD simulation?
|
|
9
|
70
|
June 16, 2021
|
|
COM pull force and AWH
|
|
7
|
66
|
June 14, 2021
|
|
Restarting simulation without the checkpoint file ( *.trr doesn't contain coordinates)
|
|
1
|
29
|
June 11, 2021
|
|
4 fs timestep vibrational frequency integration note - charmm36m forcefield
|
|
3
|
57
|
June 11, 2021
|
|
Md-vv not working with parrinello-Rahman barostat when using pulling options
|
|
9
|
76
|
June 10, 2021
|
|
System getting heated with integrator=sd
|
|
0
|
34
|
June 9, 2021
|
|
Umbrella Sampling for Surface Adsorption
|
|
0
|
44
|
June 7, 2021
|
|
Invalid order for directive atomtypes
|
|
3
|
109
|
May 26, 2021
|
|
Appropriate comm_grps usage
|
|
0
|
20
|
May 19, 2021
|
|
LJ-PME with user defined non-bonded parameters
|
|
0
|
24
|
May 19, 2021
|
|
Blowups with de novo peptides
|
|
0
|
22
|
May 15, 2021
|
|
Severe artifacts with PME during free energy calculations
|
|
3
|
41
|
May 13, 2021
|
|
Periodic molecules - infinite graphene layer
|
|
2
|
46
|
May 10, 2021
|
|
Pressure coupling
|
|
6
|
71
|
May 5, 2021
|
|
Freezegrps in ions.mdp - Segmentation fault (Core dumped) error
|
|
1
|
26
|
May 4, 2021
|
|
NVE Simulation Parameters
|
|
2
|
65
|
May 4, 2021
|
|
Free energy perturbation - mdp parameters
|
|
2
|
72
|
May 2, 2021
|
|
Effect of ewald-rtol on accuracy of the PME calculation?
|
|
1
|
27
|
April 30, 2021
|
|
Deform by Gromacs to apply shear rate
|
|
5
|
73
|
April 22, 2021
|
