|
The largest distance between excluded atoms is 1.725 nm, which is larger than the cut-off distance
|
|
12
|
5935
|
January 25, 2025
|
|
No default U-B Types
|
|
1
|
24
|
January 24, 2025
|
|
Warning: atom name in .top and .gro does not match
|
|
2
|
14
|
January 23, 2025
|
|
Invalid order for directive atomtypes (error)
|
|
17
|
7593
|
January 13, 2025
|
|
No default improper dihedral types in Amber ff14sb-OL21 for DNA simulations
|
|
2
|
37
|
December 22, 2024
|
|
Error: Topol.top file doesn`t match solv.gro file
|
|
1
|
23
|
December 18, 2024
|
|
Issues with MD Run and Fe Displacement in Hemoglobin Simulation
|
|
4
|
50
|
December 13, 2024
|
|
Number of coordinates did not match in coordinated file with the topology file
|
|
23
|
8882
|
December 9, 2024
|
|
ERROR 164 [file topol.top, line 100195]: No default Ryckaert-Bell. types
|
|
3
|
22
|
November 29, 2024
|
|
Energy minimization error sc-r-power = 48 not supported
|
|
4
|
604
|
November 18, 2024
|
|
Ligand MD simulation
|
|
2
|
32
|
November 8, 2024
|
|
Grompp errors with v2024.3: The drift estimate should be a finite value
|
|
5
|
24
|
October 30, 2024
|
|
Fatal error: Syntax error - File ffnonbonded.itp, line 5 Last line read: '[ atomtypes ]' Invalid ord
|
|
5
|
41
|
October 29, 2024
|
|
Reading double precision coordinate data with grompp
|
|
7
|
30
|
October 25, 2024
|
|
Velocity distribution and
|
|
0
|
17
|
October 15, 2024
|
|
Error in using the soft core minimization
|
|
4
|
93
|
September 24, 2024
|
|
Largest distance between excluded atoms error even though atoms are bonded
|
|
0
|
89
|
September 11, 2024
|
|
Check the Forcefield of the electrolyte system EC DEC DMC
|
|
1
|
21
|
September 9, 2024
|
|
Error in NPT Equilibration for Protein Ligand Complex MD Tutorial
|
|
3
|
144
|
August 28, 2024
|
|
For two ligand and a complex molecular dynamics simulation in GROMACS
|
|
2
|
47
|
August 15, 2024
|
|
Dihedral bonds disappearing/ignored during GROMPP step
|
|
10
|
38
|
August 14, 2024
|
|
Another Problem with Distances Between Pull Groups
|
|
3
|
542
|
July 14, 2024
|
|
Grommp error
|
|
1
|
33
|
July 9, 2024
|
|
Segmentation Fault, Error during `gmx grompp`
|
|
1
|
992
|
July 5, 2024
|
|
Segmentation fault in polymer salt and water system
|
|
1
|
61
|
June 22, 2024
|
|
Preprocessor and machine-dependency
|
|
2
|
37
|
June 19, 2024
|
|
No default Bond types, U-B types
|
|
0
|
72
|
June 15, 2024
|
|
Using Andersen-massive returns "Andersen temperature control does not work with constraints"
|
|
1
|
120
|
June 14, 2024
|
|
Segmentation falult (core dumped
|
|
7
|
299
|
June 5, 2024
|
|
Fatal error: There were 2 errors in input file(s) during ionization by using grompp module
|
|
1
|
88
|
May 31, 2024
|