Running simultaneous jobs in a same machine
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1
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10
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January 26, 2025
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No default U-B Types
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1
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24
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January 24, 2025
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Getting very high RMSD value after 75ns
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4
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12
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January 24, 2025
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Expanded ensemble: Performance impact of perturbing more atoms
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4
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16
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January 23, 2025
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There are 2 perturbed non-bonded pair interactions beyond the pair-list cutoff
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0
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10
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January 23, 2025
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Gmx mdrun on gpu problem
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0
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8
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January 22, 2025
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How to Confirm if SETTLE Algorithm is Applied in TIP4P Water Model Simulation?
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0
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9
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January 21, 2025
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Strange RMSF Graphs
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5
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21
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January 21, 2025
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GROMACS Randomly Stuck in DGX A100
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6
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31
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January 21, 2025
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Simulation time drastically slows down midway through
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4
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319
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January 19, 2025
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Help, adding PEG to my gro and top file-is not placed where it should be
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4
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30
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January 17, 2025
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Nanoparticle getting disintegrated in MD production after simulated annealing
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0
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13
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January 17, 2025
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How to put distance restraints into topology file
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25
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550
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January 16, 2025
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Hardware advice for maximizing throughput (CpHMD/Replica Exchange)
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0
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12
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January 13, 2025
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Pressure application to separate oil in water through amorphous polymer membrane
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9
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43
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January 10, 2025
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Error in user input: Invalid input values Required option was not provided
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1
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15
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January 10, 2025
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Custom exclusion of only coulomb interaction
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2
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18
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January 5, 2025
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Gromacs install with conda but can't run on GPU
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20
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159
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January 4, 2025
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Extending/Append metadynamics simulation
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1
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31
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December 30, 2024
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MD simulation of Docked structures
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2
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61
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December 30, 2024
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Membrane Protein ligand simulation
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6
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44
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December 27, 2024
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Gpu update giving error with protein ligand complex
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10
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1388
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December 23, 2024
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Invalid pointer error during production run
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1
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12
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December 19, 2024
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Error in residue topology database
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1
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20
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December 19, 2024
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NVE simulation kinetic and total energy gradually increasing
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12
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191
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December 18, 2024
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Compatibility between single precision and double precision
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3
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22
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December 17, 2024
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Benchmarking GROMACS 2023 using STMV - PME rank outside cutoff of domain decomposition
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1
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32
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December 16, 2024
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Implemetation of Nose-Hoover Langevin piston pressure control in Gromacs
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1
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16
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December 16, 2024
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Regarding my protein-dna complex molecular dynamics error
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2
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14
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December 16, 2024
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Issues with MD Run and Fe Displacement in Hemoglobin Simulation
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4
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50
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December 13, 2024
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