|
Running simultaneous jobs in a same machine
|
|
1
|
10
|
January 26, 2025
|
|
No default U-B Types
|
|
1
|
24
|
January 24, 2025
|
|
Getting very high RMSD value after 75ns
|
|
4
|
12
|
January 24, 2025
|
|
Expanded ensemble: Performance impact of perturbing more atoms
|
|
4
|
16
|
January 23, 2025
|
|
There are 2 perturbed non-bonded pair interactions beyond the pair-list cutoff
|
|
0
|
10
|
January 23, 2025
|
|
Gmx mdrun on gpu problem
|
|
0
|
8
|
January 22, 2025
|
|
How to Confirm if SETTLE Algorithm is Applied in TIP4P Water Model Simulation?
|
|
0
|
9
|
January 21, 2025
|
|
Strange RMSF Graphs
|
|
5
|
21
|
January 21, 2025
|
|
GROMACS Randomly Stuck in DGX A100
|
|
6
|
31
|
January 21, 2025
|
|
Simulation time drastically slows down midway through
|
|
4
|
319
|
January 19, 2025
|
|
Help, adding PEG to my gro and top file-is not placed where it should be
|
|
4
|
30
|
January 17, 2025
|
|
Nanoparticle getting disintegrated in MD production after simulated annealing
|
|
0
|
13
|
January 17, 2025
|
|
How to put distance restraints into topology file
|
|
25
|
550
|
January 16, 2025
|
|
Hardware advice for maximizing throughput (CpHMD/Replica Exchange)
|
|
0
|
12
|
January 13, 2025
|
|
Pressure application to separate oil in water through amorphous polymer membrane
|
|
9
|
43
|
January 10, 2025
|
|
Error in user input: Invalid input values Required option was not provided
|
|
1
|
15
|
January 10, 2025
|
|
Custom exclusion of only coulomb interaction
|
|
2
|
18
|
January 5, 2025
|
|
Gromacs install with conda but can't run on GPU
|
|
20
|
159
|
January 4, 2025
|
|
Extending/Append metadynamics simulation
|
|
1
|
31
|
December 30, 2024
|
|
MD simulation of Docked structures
|
|
2
|
61
|
December 30, 2024
|
|
Membrane Protein ligand simulation
|
|
6
|
44
|
December 27, 2024
|
|
Gpu update giving error with protein ligand complex
|
|
10
|
1388
|
December 23, 2024
|
|
Invalid pointer error during production run
|
|
1
|
12
|
December 19, 2024
|
|
Error in residue topology database
|
|
1
|
20
|
December 19, 2024
|
|
NVE simulation kinetic and total energy gradually increasing
|
|
12
|
191
|
December 18, 2024
|
|
Compatibility between single precision and double precision
|
|
3
|
22
|
December 17, 2024
|
|
Benchmarking GROMACS 2023 using STMV - PME rank outside cutoff of domain decomposition
|
|
1
|
32
|
December 16, 2024
|
|
Implemetation of Nose-Hoover Langevin piston pressure control in Gromacs
|
|
1
|
16
|
December 16, 2024
|
|
Regarding my protein-dna complex molecular dynamics error
|
|
2
|
14
|
December 16, 2024
|
|
Issues with MD Run and Fe Displacement in Hemoglobin Simulation
|
|
4
|
50
|
December 13, 2024
|