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Start simulation from xtc file?
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1
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12
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March 20, 2023
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Mis match bwtween the topol.top and solv.gro file
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13
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62
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March 19, 2023
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Fatal errors in .rtp file
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2
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31
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March 16, 2023
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Energy minimization not happening
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6
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65
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March 14, 2023
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Parrinello-Rahman instability in Gromacs 2023
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9
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107
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March 13, 2023
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Error when enabling GPU-GPU direct communication across multiple nodes
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0
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25
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March 12, 2023
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Gpu update giving error with protein ligand complex
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4
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39
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March 12, 2023
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Fatal error : The residues in the chain THR9--SER663 do not have a consistent type
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2
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38
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March 11, 2023
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Cuda error gromacs with plumed
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5
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188
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March 10, 2023
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Problem with energy exclusion groups using gmx mdrun -membed
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6
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453
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March 10, 2023
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Unevern spikes in RMSD graphs after MD simulations
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1
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28
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March 9, 2023
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Segmentation fault while using mdrun in gromacs patched with plumed
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0
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35
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March 9, 2023
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Long effects on simulation
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1
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22
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March 3, 2023
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Can I continue MD from last frame?
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4
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65
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February 28, 2023
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Warning on pressure coupling algorithm in equilibrating the system
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0
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29
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February 26, 2023
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Lincs warning in nvt
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0
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37
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February 24, 2023
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Restraining two ZN position during minimization, equilibration and MD run
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3
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31
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February 20, 2023
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Gmx trjconv
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1
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44
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February 17, 2023
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Efficiency Warning During MD Simulation
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11
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93
|
February 17, 2023
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How to know when a mdrun job will finish in the HPC
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0
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30
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February 16, 2023
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Is it possible to plot the flat bottom position restrain after an NVT run in gromacs?
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0
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27
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February 16, 2023
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Simulation Breaks the system (separates both the chains of the Antibody)
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9
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76
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February 16, 2023
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Gromacs not maintaining the bond angles of arginine during energy minimization
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1
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34
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February 16, 2023
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Relation between mdp file and gmx mdrun
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1
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30
|
February 15, 2023
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Problems with OpenCL build
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18
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114
|
February 15, 2023
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Relation of velocity generation wrt tc-grps
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7
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62
|
February 15, 2023
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Correct MDP parameters for -update GPU
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3
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314
|
February 15, 2023
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Analysis energy vdw and coulomb electrostatic for protein
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1
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48
|
February 9, 2023
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Problem with mdrun
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1
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39
|
February 9, 2023
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Simulation box keeps shrinking in MD
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15
|
688
|
February 7, 2023
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