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Update Groups Can't Be Created for GROMACS2024
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2
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16
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May 6, 2025
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Fixing coordinates of a chain after simulation
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6
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39
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May 4, 2025
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Unusual RMSD of ligand-protein
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5
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29
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May 4, 2025
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SMD output files and interpretation
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0
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7
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May 2, 2025
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RTX 5070 Not Utilized
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2
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52
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April 30, 2025
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How do we omit the positive/negative strain at zero stress?
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1
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29
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April 29, 2025
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Protein-Lipid system, protein keeps flipping or jumping
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2
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28
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April 25, 2025
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Standard library logic error (bug): (exception type: St12out_of_range)
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0
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19
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April 15, 2025
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+++ assertion failed: i>0 serial of an atom cannot be zero
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3
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21
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April 23, 2025
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Is an RMSD value above 0.36 nm (apo-form) and 0.4 to 0.5 nm (complex-form) is acceptable?
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0
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10
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April 23, 2025
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Error in docked complex simulation
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1
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30
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April 22, 2025
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Error during energy minimization
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4
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33
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April 15, 2025
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Feature Request——Hope that Acceleration can be calculated with GPU
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0
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15
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April 14, 2025
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Segmentation fault with REMD+GPU--potential bug?
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5
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26
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April 11, 2025
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Pressure coupling in system of water and gas
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1
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14
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April 11, 2025
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Mdrun detects GPUs but no GPU utilization
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3
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43
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April 11, 2025
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Fatal error: Cannot run short-ranged nonbonded interactions on a GPU because no GPU is detected
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11
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76
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April 9, 2025
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GROMACS RMSD Analysis: Understanding Non-Zero Initial Values
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2
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19
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April 4, 2025
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I cannot follow the martini tutorial Parametrization of a new small molecule
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9
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233
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April 3, 2025
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Is the frame interval important for studying the membrane properties?
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1
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8
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April 3, 2025
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GROMACS cant detect GPU (AMD)
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4
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69
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April 2, 2025
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GPUs usage with cutoff-scheme = group
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2
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22
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April 1, 2025
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Your system is not well equilibrated in NVT mdrun
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0
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13
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March 29, 2025
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Atomistic simulation
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0
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9
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March 28, 2025
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Two simulations on a node don't fully utilize independent GPUs
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2
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14
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March 26, 2025
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Fatal error: Failed to lock: annealing.log. Already running simulation?
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2
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23
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March 25, 2025
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Newbox generation error
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1
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12
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March 24, 2025
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Help me with the workstation configuration for Gromacs
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2
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32
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March 24, 2025
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Ligand leaving binding pocket
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15
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174
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March 23, 2025
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Segmentration Fault and to small of a timestep problem from a Amber built system
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19
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523
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November 11, 2024
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