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Segmentation Fault (Energy Minimization)
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1
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9
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November 20, 2024
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Applying constraints to different molecules in a same system
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0
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14
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November 19, 2024
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Mdrun not starting on Windows 10
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0
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8
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November 19, 2024
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.trr file utilities
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1
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12
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November 19, 2024
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NVE simulation kinetic and total energy gradually increasing
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6
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121
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November 18, 2024
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LINCS warning in coarse grained system
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1
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9
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November 18, 2024
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Rerun with mts
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3
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18
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November 18, 2024
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Energy minimization error sc-r-power = 48 not supported
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4
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582
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November 18, 2024
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Encountered crashed mdrun when request 2 GPUs on parallel simulations with 15 replicas
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0
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8
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November 15, 2024
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Gro file generated at the end of a run wrapped or unwrapped?
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5
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16
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November 15, 2024
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Help, adding PEG to my gro and top file-is not placed where it should be
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3
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24
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November 12, 2024
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Segmentration Fault and to small of a timestep problem from a Amber built system
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19
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433
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November 11, 2024
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Unbalanced CPU and GPU Utilization in GROMACS
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1
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21
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November 9, 2024
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Box volume gradually increased with 0.01 fs time step
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11
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55
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November 1, 2024
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Running MD for capped protein using Charm36 (charmm36_ljpme-jul2022.ff)
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2
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45
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November 1, 2024
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Gromacs umbrella sampling error for pull force calculation
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4
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29
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October 30, 2024
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How to Calculate Energies for "Specific" Atoms?
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2
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21
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October 30, 2024
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Hbond issue with molecule
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1
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22
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October 30, 2024
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Domain decomposition error + Setting MPI ranks compatible with custom domains
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2
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757
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October 30, 2024
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Gromacs error adding a number 1 to an atom
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8
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58
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October 29, 2024
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System getting out of box upon simulation
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2
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35
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October 29, 2024
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LINCS Error in production run
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1
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13
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October 29, 2024
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Is it possible to calculate free energy landscape instead of umbrella sampling's PMF?
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2
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38
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October 23, 2024
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Heterogeneous mpirun with unequal number of GPUs
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0
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10
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October 21, 2024
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Error in the coordinate file sol.gro and topol.gro
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1
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31
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October 19, 2024
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GROMACS benchmark on 33 GPUs
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0
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29
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October 17, 2024
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I cannot follow the martini tutorial Parametrization of a new small molecule
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8
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44
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October 15, 2024
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Force field for Magnesium
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1
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30
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October 8, 2024
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Energy Interaction between two groups
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11
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103
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October 8, 2024
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Running an NPT simulation after NVT (domain decomposition error)
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3
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56
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October 7, 2024
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