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Gromacs error adding a number 1 to an atom
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1
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2
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September 18, 2024
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MDP files for DNA free energy perturbation (equilibrium)
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0
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4
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September 18, 2024
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SD integrator vs MD integrator
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5
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44
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September 17, 2024
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Structure appear broken
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2
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18
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September 16, 2024
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How to solve Segmentation Fault (Core Dumped) Error in GROMACS?
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8
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51
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September 16, 2024
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Fatal error: Perturbed masses or constraints are not supported by rerun
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1
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18
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September 10, 2024
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Assessing the stability of a mutant protein withGROMACS
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6
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141
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September 10, 2024
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Check the Forcefield of the electrolyte system EC DEC DMC
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1
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9
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September 9, 2024
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Freeing of the device buffer failed. CUDA error #700
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2
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287
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September 6, 2024
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Gmx mdrun is stuck at step=0
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23
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877
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September 5, 2024
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How can one keep the reference group fixed in an SMD simulation?
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2
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32
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September 5, 2024
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Topology files with packmol
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5
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308
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September 4, 2024
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Automatically restart from checkpoint
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1
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11
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September 3, 2024
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Water inside protein?
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0
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10
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August 29, 2024
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Crystallography water molecules in protein-ligand complex
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0
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14
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August 29, 2024
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Error in NPT Equilibration for Protein Ligand Complex MD Tutorial
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3
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32
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August 28, 2024
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Confusing Density from NPT run
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8
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35
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August 28, 2024
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The nvt time is too long
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3
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28
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August 28, 2024
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Second minimization
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1
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11
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August 28, 2024
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Query regarding Dihedral restrain
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2
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9
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August 27, 2024
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Why Fatal error: Unexpected cudaStreamQuery failure happend in gromacs2019?
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28
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1172
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August 27, 2024
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Constraint error in algorithm Lincs at step 0
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1
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13
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August 27, 2024
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Multi-walker awh simulation using one gpu
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2
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28
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August 27, 2024
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Box volume gradually increased with 0.01 fs time step
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3
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25
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August 26, 2024
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GMX dipoles autocorrelation function error
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0
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12
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August 26, 2024
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Ligand moving out of the pocket in one of the replicate
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1
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14
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August 21, 2024
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Issue of High Potential Energy on Running Minimization
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22
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597
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August 20, 2024
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Gmx mdrun with -reprod does not reproduce a trajectory
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1
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13
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August 20, 2024
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NPT equilibration with LINCS and frozen solute
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1
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23
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August 20, 2024
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Cutoff-scheme and intermolecular interactions
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1
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35
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August 20, 2024
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