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Turning off DD
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0
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4
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October 2, 2022
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RMSD Calculation of Protein (have 2 chains-heterodimer)
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4
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17
|
October 2, 2022
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System blowing up in decoupled ligand (in protein complex) simulation for ABFE calculations
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7
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24
|
September 30, 2022
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Too much time on PME mesh
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3
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23
|
September 29, 2022
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Structure Factor
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1
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18
|
September 29, 2022
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How to control the thickness of lipid bilayer
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1
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23
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September 28, 2022
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Introducing New atom to the Gromacs forcefield
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2
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40
|
September 28, 2022
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Preventing Gromacs from wrapping the trajectory
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4
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25
|
September 28, 2022
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Error with gmx mdrun -deffnm md_0_10 -v -nb gpu
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6
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67
|
September 27, 2022
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How to orient the protein for lipid bilayer simulation
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2
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25
|
September 27, 2022
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File input/output error: Cannot rename checkpoint file; maybe you are out of disk space?
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5
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57
|
September 26, 2022
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Simulation unstable with external potential
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4
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32
|
September 24, 2022
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Performace lost due to PME ranks
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0
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21
|
September 23, 2022
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Dump Trajectories with Wrapped Boundaries
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1
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22
|
September 23, 2022
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A question about gen_seed in the log file
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6
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192
|
September 22, 2022
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Units of Lennard Jones Potential Parameters
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2
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55
|
September 22, 2022
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Problem in generating topology file of a polymer
|
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9
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75
|
September 21, 2022
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How to resolve the run_inflategro.sh error in Gromacs Membrane Protein Tutorial
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0
|
13
|
September 21, 2022
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Assertion failed: Condition: ip.constr.dA > 0 We should only have positive constraint lengths here
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3
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30
|
September 20, 2022
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Gmx grompp error
|
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1
|
33
|
September 19, 2022
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Detergent micelle interactions
|
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0
|
20
|
September 17, 2022
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Can't open tpr file
|
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4
|
45
|
September 17, 2022
|
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Mpirun for mdrun
|
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3
|
132
|
September 16, 2022
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Harvesting only electrostatic force from rerun
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4
|
28
|
September 16, 2022
|
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How to offload more work on GPU than CPU?
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2
|
51
|
September 16, 2022
|
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Freezegrps are silently overridden for charmm tip3p water molecules that are settled
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2
|
21
|
September 15, 2022
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REMD restart
|
|
1
|
35
|
September 14, 2022
|
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Fatal error in protein - ligand md run
|
|
8
|
58
|
September 12, 2022
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Strip solvent from trajectory - Cannot do both runtime modification and charge-zeroing/index
|
|
6
|
87
|
September 12, 2022
|
|
How to compute energies of individual proteins in a system using GROMACS gmx mdrun rerun?
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|
2
|
28
|
September 12, 2022
|