Extreme RAM consumption of an md simulation
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11
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55
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September 28, 2023
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Vacuum Simulations in GROMACS 2020+
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3
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42
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September 27, 2023
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Generating PDB file for custom DNA sequence?
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0
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8
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September 27, 2023
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How to add an organic molecule in an enzym's active pocket?
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2
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26
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September 27, 2023
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How can I visualize my md files on the VMD? and which files should I use?
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0
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20
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September 26, 2023
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Mdp guidelines
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1
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29
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September 21, 2023
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Anisotropic pressure setting for curvature membrane
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0
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28
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September 20, 2023
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How to add water (solvate) to a pre-prepared membrane model?
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0
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34
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September 20, 2023
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Multiscale hybrid simulations of all-atom and coarse-grained systems
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0
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27
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September 20, 2023
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Gmx mdrun is stuck at step=0
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12
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68
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September 18, 2023
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Grmacs_Drude
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3
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45
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September 15, 2023
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When restarting concecutive naming/loading of checkpoint files fails
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1
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35
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September 12, 2023
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Segmentation fault - core dumped
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8
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270
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September 11, 2023
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Van der Waals potential scaling on selected atoms
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0
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36
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September 7, 2023
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Restraint atoms close to other atoms
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0
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42
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September 4, 2023
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PC specifications
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2
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106
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August 24, 2023
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Relaxing a harmonic restraint using restraint-lambda
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0
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81
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August 22, 2023
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HEME-Histidine missing dihedrals
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3
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54
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August 14, 2023
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Error when running NVT
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1
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82
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August 9, 2023
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Md simulation
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1
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38
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August 9, 2023
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VMD Programmer Position Available (Research Programmer - Beckman Institute, University of Illinois)
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0
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66
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August 2, 2023
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Do long simulations have to be long?
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2
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102
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August 2, 2023
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Verify posres
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0
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55
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July 27, 2023
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Gmx editconf and number of atom limit
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5
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112
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July 18, 2023
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Simulation of condensate system with 100 chains of protein
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0
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79
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July 4, 2023
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All lipids defined as part of one molecule in topology
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10
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168
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July 4, 2023
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Adding more NVIDIA cards
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0
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74
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June 22, 2023
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Running pdb2gmx on large water/membrane system
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0
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115
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June 22, 2023
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Single molecule simulation in Gromacs
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2
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93
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June 21, 2023
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Random PBC issues
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0
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86
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June 19, 2023
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