Gromacs Issue on EPYC 7B12 Workstation
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7
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39
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March 30, 2023
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Problem in the final step for 200 ns
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4
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19
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March 26, 2023
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How to choose N and C-terminals of a protein to do a md simulation?
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1
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12
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March 26, 2023
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Replica-exchanging temperature error in REST2
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2
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26
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March 26, 2023
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Requesting help for gromacs 2020.1 installation
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10
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64
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March 21, 2023
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Mis match bwtween the topol.top and solv.gro file
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13
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69
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March 19, 2023
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Forcefield to simulate RNA molecules containing modifications with GROMACS and amber ff
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0
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27
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March 16, 2023
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How to build 2Fe-2S cluster model for simulation?
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4
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35
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March 16, 2023
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Problem with energy exclusion groups using gmx mdrun -membed
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6
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468
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March 10, 2023
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Orientation of the electric field when simulating membrane potential
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1
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71
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March 6, 2023
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Restraining two ZN position during minimization, equilibration and MD run
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3
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36
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February 20, 2023
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Efficiency Warning During MD Simulation
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11
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98
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February 17, 2023
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Is it possible to plot the flat bottom position restrain after an NVT run in gromacs?
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0
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38
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February 16, 2023
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Gromacs not maintaining the bond angles of arginine during energy minimization
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1
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39
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February 16, 2023
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Relation of velocity generation wrt tc-grps
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7
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65
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February 15, 2023
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Simulation box keeps shrinking in MD
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15
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715
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February 7, 2023
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Warning in NVT equilibration
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1
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50
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February 6, 2023
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Help regarding coarse graining a molecule in GROMACS using VOTCA
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0
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35
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January 28, 2023
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Preventing Gromacs from wrapping the trajectory
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5
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130
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January 24, 2023
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Adding charges to trr file
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1
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34
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January 23, 2023
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Solvation Free Energy of NaCl
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0
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48
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January 20, 2023
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GROMACS Tutorial KAPL in DPCC
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0
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70
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January 16, 2023
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Assertion failed: ; Condition: realGrid_ ;Bad (null) input real-space grid
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1
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40
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December 29, 2022
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I got several warning about system exploding and 1,4 interaction. How to solve it?
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0
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47
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December 27, 2022
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How to construct the constant speed shear simulation?
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0
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64
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December 23, 2022
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LINCS warning during energy minimizations
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7
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270
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December 10, 2022
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CgenFF parameters showing high penalty scores
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12
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146
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December 8, 2022
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Issue with MPI
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3
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68
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December 6, 2022
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Ionic crystal behaviour in Gromacs
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0
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46
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December 1, 2022
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Error performing Martini MD - From CHARMM-GUI creator files
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0
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75
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November 24, 2022
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