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Free energy calc gives "WARNING: Some of these results violate the Second Law of Thermodynamics"
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4
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61
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September 17, 2021
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Simulation speed on Different GPU cards; same simulation setting
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0
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27
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August 23, 2021
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Number of ranks selected contains a large prime factor
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2
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73
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August 3, 2021
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MD simulation of hydroxyapatite [ 110 ] surface slab using GROMACS
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0
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43
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July 27, 2021
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How to simulate two ligands? My setup doesnt include any polypeptide
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2
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48
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July 2, 2021
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'Turning off' interactions
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1
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56
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June 16, 2021
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How to predict low temperature structure of ionic liquids using MD simulation?
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9
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88
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June 16, 2021
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How do I add nitrate anion for simulation with AOT reverse micelle?
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0
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36
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June 13, 2021
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Mismatch of topology and solv.gro
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0
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47
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May 31, 2021
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Duplicating molecules in topolgy file
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6
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59
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May 13, 2021
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Periodic molecules - infinite graphene layer
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2
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71
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May 10, 2021
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Protein/cofactor + ligand
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7
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71
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May 5, 2021
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How to prepare buffer salt for Gromacs?
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4
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57
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May 5, 2021
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Is it necessary to genion ions to protein system
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5
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67
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May 5, 2021
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How to avoid an 'isopeptide bond' to break in GROMACS?
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2
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69
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April 23, 2021
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Problem with energy exclusion groups using gmx mdrun -membed
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2
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64
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April 20, 2021
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Triclinic box vectors in a gro file
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2
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85
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March 30, 2021
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