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Issue with MPI
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3
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5
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December 6, 2022
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Ionic crystal behaviour in Gromacs
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0
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11
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December 1, 2022
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Error performing Martini MD - From CHARMM-GUI creator files
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0
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13
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November 24, 2022
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How can I get itp file for ruthenium complex in Gromacs?
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0
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23
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November 8, 2022
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RDF Calculation of water
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0
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27
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November 6, 2022
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Polyethylene and Argon : Simulated annealing
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0
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24
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October 31, 2022
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Molecular Dynamics simulation of electrons
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1
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88
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October 25, 2022
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'Triclinic box too skewed' - will this affect the way my system behaves?
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3
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40
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October 21, 2022
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Metal ion moves away from the enzyme during the simulation
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1
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34
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October 21, 2022
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LJ parameters adding
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1
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48
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October 14, 2022
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Covalent bond between protein and ligand (cobalamin)
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3
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62
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October 11, 2022
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Too much time on PME mesh
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3
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78
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September 29, 2022
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How to control the thickness of lipid bilayer
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1
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43
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September 28, 2022
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Introducing New atom to the Gromacs forcefield
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2
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67
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September 28, 2022
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Preventing Gromacs from wrapping the trajectory
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4
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63
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September 28, 2022
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A question about gen_seed in the log file
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6
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260
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September 22, 2022
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Problem in generating topology file of a polymer
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9
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108
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September 21, 2022
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How to resolve the run_inflategro.sh error in Gromacs Membrane Protein Tutorial
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0
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39
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September 21, 2022
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Time missmach between concatenated simulations
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0
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37
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September 6, 2022
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Free energy calc gives "WARNING: Some of these results violate the Second Law of Thermodynamics"
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5
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397
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September 6, 2022
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Why load balancing is limited by minimum cell size in dimension X,Y,Z?
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1
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120
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September 5, 2022
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Why huge amount of SOL added during gmx genion in some cases?
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5
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112
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September 3, 2022
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Little to no movement or change in protein structure after 50ns MD
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2
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84
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September 2, 2022
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NPT production run, multiple independent simulations, and end-state free energy calculations
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0
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54
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August 22, 2022
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Do we need Pressure coupling while pulling during umbrella sampling
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2
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81
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August 20, 2022
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New residue top
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25
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346
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August 18, 2022
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How can I find the center of mass of a lipid bilayer?
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6
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79
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August 17, 2022
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Fatal Error in Steered MD simulation
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3
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124
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August 5, 2022
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Gas-phase MD simulations, switch off PME and Coulomb/Lennard-Jones cut-offs set to infinity
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8
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204
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August 4, 2022
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Acetyllysine parameters
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0
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84
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July 30, 2022
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