|
Extreme RAM consumption of an md simulation
|
|
11
|
55
|
September 28, 2023
|
|
Vacuum Simulations in GROMACS 2020+
|
|
3
|
42
|
September 27, 2023
|
|
Generating PDB file for custom DNA sequence?
|
|
0
|
8
|
September 27, 2023
|
|
How to add an organic molecule in an enzym's active pocket?
|
|
2
|
26
|
September 27, 2023
|
|
How can I visualize my md files on the VMD? and which files should I use?
|
|
0
|
20
|
September 26, 2023
|
|
Mdp guidelines
|
|
1
|
29
|
September 21, 2023
|
|
Anisotropic pressure setting for curvature membrane
|
|
0
|
28
|
September 20, 2023
|
|
How to add water (solvate) to a pre-prepared membrane model?
|
|
0
|
34
|
September 20, 2023
|
|
Multiscale hybrid simulations of all-atom and coarse-grained systems
|
|
0
|
27
|
September 20, 2023
|
|
Gmx mdrun is stuck at step=0
|
|
12
|
68
|
September 18, 2023
|
|
Grmacs_Drude
|
|
3
|
45
|
September 15, 2023
|
|
When restarting concecutive naming/loading of checkpoint files fails
|
|
1
|
35
|
September 12, 2023
|
|
Segmentation fault - core dumped
|
|
8
|
270
|
September 11, 2023
|
|
Van der Waals potential scaling on selected atoms
|
|
0
|
36
|
September 7, 2023
|
|
Restraint atoms close to other atoms
|
|
0
|
42
|
September 4, 2023
|
|
PC specifications
|
|
2
|
106
|
August 24, 2023
|
|
Relaxing a harmonic restraint using restraint-lambda
|
|
0
|
81
|
August 22, 2023
|
|
HEME-Histidine missing dihedrals
|
|
3
|
54
|
August 14, 2023
|
|
Error when running NVT
|
|
1
|
82
|
August 9, 2023
|
|
Md simulation
|
|
1
|
38
|
August 9, 2023
|
|
VMD Programmer Position Available (Research Programmer - Beckman Institute, University of Illinois)
|
|
0
|
66
|
August 2, 2023
|
|
Do long simulations have to be long?
|
|
2
|
102
|
August 2, 2023
|
|
Verify posres
|
|
0
|
55
|
July 27, 2023
|
|
Gmx editconf and number of atom limit
|
|
5
|
112
|
July 18, 2023
|
|
Simulation of condensate system with 100 chains of protein
|
|
0
|
79
|
July 4, 2023
|
|
All lipids defined as part of one molecule in topology
|
|
10
|
168
|
July 4, 2023
|
|
Adding more NVIDIA cards
|
|
0
|
74
|
June 22, 2023
|
|
Running pdb2gmx on large water/membrane system
|
|
0
|
115
|
June 22, 2023
|
|
Single molecule simulation in Gromacs
|
|
2
|
93
|
June 21, 2023
|
|
Random PBC issues
|
|
0
|
86
|
June 19, 2023
|