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Backmapping from coarse grain to all atom
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0
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8
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June 13, 2025
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Is it possible to use an eam potential?
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2
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15
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June 5, 2025
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Umbrella-sampling setup of molecule permeation through interface surfactant membrane
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20
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229
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June 4, 2025
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Membrane Equilibrium
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3
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19
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June 2, 2025
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PBC Box Failing to Expand to Input .gro File Parameters + Unwanted Position Restrained Protein
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0
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9
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May 26, 2025
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Mdrun crashes with some md parameter during NPT (gmx compiled for rocm,AdaptiveCPP)
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8
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70
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May 22, 2025
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Studying Zn2+ tetrahedal coordination stability
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0
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14
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May 21, 2025
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How to correctly define disulfide bonds in GROMACS?
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0
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28
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May 20, 2025
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System has non-zero total charge: -1.000000
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1
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23
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May 19, 2025
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Potentials on gromacs
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0
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11
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May 16, 2025
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Splitting 100ns Gromacs runs into 25ns smaller chunks
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0
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25
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May 19, 2025
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SMD Pulling of DNA Toward Asymmetric Bilayer
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18
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173
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May 17, 2025
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How to solve "No default bond types for interaction"
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0
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5
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May 16, 2025
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PC crashes and loses video during heavy simulations on gromacs with RTX 5070 Ti
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7
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47
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May 15, 2025
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Water appearing in bilayer core during NPT
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2
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27
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May 12, 2025
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Interpretation of Nonzero 14-LJ and 14-Coul Terms for Nonbonded Groups
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7
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34
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May 8, 2025
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Density fit tutorial
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0
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17
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May 8, 2025
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Update Groups Can't Be Created for GROMACS2024
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2
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33
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May 6, 2025
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Protein-Lipid system, protein keeps flipping or jumping
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2
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38
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April 25, 2025
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+++ assertion failed: i>0 serial of an atom cannot be zero
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3
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27
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April 23, 2025
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Error in docked complex simulation
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1
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33
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April 22, 2025
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CGENFF not working
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1
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43
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April 20, 2025
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CHARMM-GUI doesn't support selenocysteine (SEC), which is essential for my protein, and I need help
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0
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22
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April 18, 2025
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PBC Artifacts in 20 bp DNA System
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0
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6
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April 16, 2025
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Gromacs Version
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5
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680
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December 6, 2024
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PBC artifact issue
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0
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25
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April 12, 2025
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Pressure coupling in system of water and gas
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1
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18
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April 11, 2025
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Adding new parameters to charmm ff for sulfur-carbon bond
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0
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12
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April 10, 2025
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Freezing Water
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1
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26
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April 9, 2025
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How to prevent two molecules from interacting with each other?
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3
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26
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April 4, 2025
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