|
Gromacs Issue on EPYC 7B12 Workstation
|
|
7
|
39
|
March 30, 2023
|
|
Problem in the final step for 200 ns
|
|
4
|
19
|
March 26, 2023
|
|
How to choose N and C-terminals of a protein to do a md simulation?
|
|
1
|
12
|
March 26, 2023
|
|
Replica-exchanging temperature error in REST2
|
|
2
|
26
|
March 26, 2023
|
|
Requesting help for gromacs 2020.1 installation
|
|
10
|
64
|
March 21, 2023
|
|
Mis match bwtween the topol.top and solv.gro file
|
|
13
|
69
|
March 19, 2023
|
|
Forcefield to simulate RNA molecules containing modifications with GROMACS and amber ff
|
|
0
|
27
|
March 16, 2023
|
|
How to build 2Fe-2S cluster model for simulation?
|
|
4
|
35
|
March 16, 2023
|
|
Problem with energy exclusion groups using gmx mdrun -membed
|
|
6
|
468
|
March 10, 2023
|
|
Orientation of the electric field when simulating membrane potential
|
|
1
|
71
|
March 6, 2023
|
|
Restraining two ZN position during minimization, equilibration and MD run
|
|
3
|
36
|
February 20, 2023
|
|
Efficiency Warning During MD Simulation
|
|
11
|
98
|
February 17, 2023
|
|
Is it possible to plot the flat bottom position restrain after an NVT run in gromacs?
|
|
0
|
38
|
February 16, 2023
|
|
Gromacs not maintaining the bond angles of arginine during energy minimization
|
|
1
|
39
|
February 16, 2023
|
|
Relation of velocity generation wrt tc-grps
|
|
7
|
65
|
February 15, 2023
|
|
Simulation box keeps shrinking in MD
|
|
15
|
715
|
February 7, 2023
|
|
Warning in NVT equilibration
|
|
1
|
50
|
February 6, 2023
|
|
Help regarding coarse graining a molecule in GROMACS using VOTCA
|
|
0
|
35
|
January 28, 2023
|
|
Preventing Gromacs from wrapping the trajectory
|
|
5
|
130
|
January 24, 2023
|
|
Adding charges to trr file
|
|
1
|
34
|
January 23, 2023
|
|
Solvation Free Energy of NaCl
|
|
0
|
48
|
January 20, 2023
|
|
GROMACS Tutorial KAPL in DPCC
|
|
0
|
70
|
January 16, 2023
|
|
Assertion failed: ; Condition: realGrid_ ;Bad (null) input real-space grid
|
|
1
|
40
|
December 29, 2022
|
|
I got several warning about system exploding and 1,4 interaction. How to solve it?
|
|
0
|
47
|
December 27, 2022
|
|
How to construct the constant speed shear simulation?
|
|
0
|
64
|
December 23, 2022
|
|
LINCS warning during energy minimizations
|
|
7
|
270
|
December 10, 2022
|
|
CgenFF parameters showing high penalty scores
|
|
12
|
146
|
December 8, 2022
|
|
Issue with MPI
|
|
3
|
68
|
December 6, 2022
|
|
Ionic crystal behaviour in Gromacs
|
|
0
|
46
|
December 1, 2022
|
|
Error performing Martini MD - From CHARMM-GUI creator files
|
|
0
|
75
|
November 24, 2022
|