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Protein-protein interaction tutorial
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22
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713
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December 21, 2024
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1-4 interactions not tallying
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0
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4
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December 20, 2024
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Error in CG simulation for Graphene
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0
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8
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December 20, 2024
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Error: Topol.top file doesn`t match solv.gro file
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1
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11
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December 18, 2024
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Easily lookup the origin of the opls_XXX atom types?
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1
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10
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December 18, 2024
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Simulating the interaction between cellulose (polysaccharide) and proteins
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0
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5
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December 17, 2024
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Patchy particles to prepare coarse-grain simulations
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0
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10
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December 12, 2024
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Issues with MD Run and Fe Displacement in Hemoglobin Simulation
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4
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39
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December 13, 2024
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Chloroform as a solvent in Charmm36 force field
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0
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11
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December 11, 2024
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Error in solvation step using OPLS FF
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0
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12
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December 11, 2024
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How to simulate d-amino acids
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12
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53
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December 10, 2024
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Types of ions for system
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2
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12
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December 6, 2024
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Gromacs Version
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5
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486
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December 6, 2024
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MINFF: a new family of forcefields for minerals
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0
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12
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December 5, 2024
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CGenFF ERROR - attype warning: unknown sulfur type (SD) not supported; skipped molecule
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1
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25
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December 4, 2024
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Error about umbrella sampling(pulling simulation)
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1
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15
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December 5, 2024
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Error in Restraining the Ligand
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4
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13
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December 4, 2024
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Error in topol.top and sol.gro files
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3
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24
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December 3, 2024
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Distorted crystal after EM
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0
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8
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December 2, 2024
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How do I convert the parameters of Buckingham potential to the parameters of LJ
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0
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17
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December 2, 2024
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Gmx grompp is broken and distorting my input PDB?
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2
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14
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December 1, 2024
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What are the potential risks of having a too high pulling rate in Gromacs umbrella sampling?
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7
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38
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November 26, 2024
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How to use brownian dynamics with gromacs
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3
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185
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November 25, 2024
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How to write flat-bottomed position restraints to prevent water layer from moving in Z direction?
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10
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48
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November 23, 2024
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Error in pdb2gmx while parsing cyclic peptide
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0
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8
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November 21, 2024
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MD Simulation for Small Molecule aggregation
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4
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46
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November 20, 2024
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Applying constraints to different molecules in a same system
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0
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32
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November 19, 2024
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Water-alcohol binary mixture preparation and shrinking of box size
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6
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26
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November 18, 2024
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Energy minimization error sc-r-power = 48 not supported
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4
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590
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November 18, 2024
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Free energy of specific bond breaking/formation through thermodynamic integration
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4
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25
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November 12, 2024
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