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Amber19SB residue-specific cmap support
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|
0
|
4
|
July 21, 2021
|
|
Capping residue ACE not recognised from the rtp file
|
|
9
|
132
|
July 15, 2021
|
|
Materials studio to Gromacs conversion
|
|
0
|
16
|
July 14, 2021
|
|
GROMCAS implementation of the AMBER99SB-UCB force field
|
|
0
|
9
|
July 9, 2021
|
|
Will vdw cutoffs in the mdp file affect my user-defined interactions?
|
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1
|
26
|
July 6, 2021
|
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Non-integer charges of arginine
|
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7
|
125
|
July 4, 2021
|
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Amber FF parameters for metal binding centres
|
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3
|
47
|
June 16, 2021
|
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'Turning off' interactions
|
|
1
|
34
|
June 16, 2021
|
|
How can i keep sugars fixed in protein during the MD simulation?
|
|
1
|
36
|
June 16, 2021
|
|
How to predict low temperature structure of ionic liquids using MD simulation?
|
|
9
|
70
|
June 16, 2021
|
|
How do I add nitrate anion for simulation with AOT reverse micelle?
|
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0
|
31
|
June 13, 2021
|
|
How to use a distance dependent dielectric constant, ε(r), in GROMACS?
|
|
1
|
39
|
June 11, 2021
|
|
Fe+3 force field parameters for biomolecular simulations
|
|
1
|
29
|
June 11, 2021
|
|
4 fs timestep vibrational frequency integration note - charmm36m forcefield
|
|
3
|
57
|
June 11, 2021
|
|
Help on how to solve "atom N not found in building block 1ADE while combining tdb and rtp"
|
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4
|
33
|
June 6, 2021
|
|
Adding non-standard amino acid topologies to CHARMM36 using CHARMM-GUI
|
|
1
|
41
|
June 4, 2021
|
|
"Can't find dummy mass for type CT bonded to type C8 in the virtual site database (.vsd files)"
|
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0
|
19
|
June 4, 2021
|
|
Problem with repeating atom type in .itp file?
|
|
1
|
25
|
May 31, 2021
|
|
Invalid order for directive atomtypes
|
|
3
|
109
|
May 26, 2021
|
|
.IFN file in ATB server
|
|
4
|
27
|
May 19, 2021
|
|
Addetive charmm36_2021 forcefield
|
|
1
|
44
|
May 19, 2021
|
|
Charmm36 does not recognize CU atom
|
|
4
|
63
|
May 17, 2021
|
|
Error in grompp
|
|
1
|
41
|
May 14, 2021
|
|
Gromacs error
|
|
0
|
17
|
May 13, 2021
|
|
Duplicating molecules in topolgy file
|
|
6
|
48
|
May 13, 2021
|
|
Topology file by ATB or PRODRG
|
|
0
|
25
|
May 11, 2021
|
|
CHARMM36 to GROMACS porting
|
|
3
|
52
|
May 6, 2021
|
|
Protein/cofactor + ligand
|
|
7
|
58
|
May 5, 2021
|
|
Adding SEP parameter to AMBER99SB.ff
|
|
11
|
54
|
May 3, 2021
|
|
Atypical nucleotides missing in the newest versions of CHARMM36
|
|
4
|
41
|
April 30, 2021
|
