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Problem with CHARMM virtual sites in drug molecules
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7
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200
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December 6, 2022
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Why did ligand leave the binding pocket?
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1
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143
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December 6, 2022
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Hydronium model compatible with TIP4P
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0
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9
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December 5, 2022
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Pairwise interactions that do not follow typewise nonbonded parameters
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3
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17
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November 22, 2022
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Pdb2gmx fatal error
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2
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25
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November 22, 2022
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Newest CHARMM36 port for GROMACS
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11
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2776
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November 21, 2022
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Is it possible to output the topology file without include
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2
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52
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November 18, 2022
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How to fix the LINCS warning problems during MD running that orignially obtained from Chamm-gui
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0
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29
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November 6, 2022
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TIP4/5P virtual sites - ptype and charge in charmm36-jul2022.ff
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3
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33
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November 4, 2022
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Is it possible to use Drude force field in gromacs-plumed?
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2
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33
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November 1, 2022
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Modified aminoacid
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7
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58
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October 31, 2022
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Molecular Dynamics simulation of electrons
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1
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88
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October 25, 2022
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Building topology for a modified RNA in complex with protein
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3
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44
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October 24, 2022
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How does GROMACS know which bonds it should use?
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4
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54
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October 17, 2022
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Writting an amber force field
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3
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50
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October 14, 2022
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LJ parameters adding
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1
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48
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October 14, 2022
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GROMACS throwing errors on charmm GUI output
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0
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48
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October 12, 2022
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Covalent bond between protein and ligand (cobalamin)
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3
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62
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October 11, 2022
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Structure Factor
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2
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47
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October 11, 2022
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How to generate topology files (topol.top) lipid and user defined molecule mixture MD simulation?
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5
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98
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October 4, 2022
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Properly including bromide in GROMOS96 54a7
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2
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74
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September 30, 2022
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Introducing New atom to the Gromacs forcefield
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2
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67
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September 28, 2022
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Area per lipid in DPPC1024
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0
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45
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September 22, 2022
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Units of Lennard Jones Potential Parameters
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2
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118
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September 22, 2022
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Dual topology file for Alchemical transformation of water to ions
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2
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98
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September 21, 2022
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Implementation of custom external field
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3
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81
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September 19, 2022
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A shift in molecules between topol.top and solv.gro
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1
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41
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September 18, 2022
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Charmm36 ff port has a missing dihedral for some N-terminal NH2 builds
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1
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42
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September 15, 2022
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Fatal error: Topology include file "gromos53a6_lipid.ff/forcefield.itp" not found; MEMBRANE PROTEIN
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15
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152
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September 5, 2022
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Error in energy minimization done after system inflation
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2
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53
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September 3, 2022
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