|
How to create restrained file for sol
|
|
0
|
4
|
July 15, 2025
|
|
How to solve the gaps in Charmm27 forcefield for RNA molecules?
|
|
0
|
6
|
July 14, 2025
|
|
Membrane Protein ligand simulation
|
|
11
|
196
|
July 10, 2025
|
|
How to write ryckaert-bellemans function in oplsaa force field
|
|
0
|
11
|
July 7, 2025
|
|
Clarification on Iodide Parameters for CHARMM36 in GROMACS
|
|
0
|
21
|
June 30, 2025
|
|
How to use ligand parameter file generated by ffTK in GROMACS?
|
|
6
|
358
|
June 27, 2025
|
|
How to prepare nucleotides for MD simulation?
|
|
0
|
19
|
June 26, 2025
|
|
LINCS Warning or Freeze Behavior Depends on GROMACS Version
|
|
0
|
15
|
June 20, 2025
|
|
Forcefield to simulate RNA molecules containing modifications with GROMACS and amber ff
|
|
2
|
385
|
June 20, 2025
|
|
Prepare HEME topology
|
|
5
|
531
|
June 17, 2025
|
|
Requirement of Gallium phosphide(GaP) forcefield prameters for MD calculation
|
|
0
|
18
|
June 8, 2025
|
|
Does bond order in MOL2 file affect rtp generation and pdb2gmx?
|
|
2
|
25
|
June 5, 2025
|
|
Is it possible to use an eam potential?
|
|
2
|
21
|
June 5, 2025
|
|
OPLS/2020 force field for GROMACS?
|
|
3
|
76
|
June 4, 2025
|
|
Confusion over RB and Fourier Dihedrals
|
|
0
|
10
|
May 29, 2025
|
|
Studying Zn2+ tetrahedal coordination stability
|
|
0
|
15
|
May 21, 2025
|
|
How to make dihedral force constant in CB9H10 cage boron cluster
|
|
0
|
9
|
May 21, 2025
|
|
Potential bug in pdb2gmx
|
|
1
|
27
|
May 20, 2025
|
|
System has non-zero total charge: -1.000000
|
|
1
|
25
|
May 19, 2025
|
|
ERROR 1 [file dd.itp, line 198]: No default Proper Dih. types
|
|
0
|
20
|
May 19, 2025
|
|
Fatal error: Residue 175 named GLU of a molecule in the input file was mapped to an entry in the top
|
|
0
|
11
|
May 18, 2025
|
|
Atom C1 not found in building block 1MET while combining tbp and trp
|
|
0
|
52
|
May 18, 2025
|
|
Modifying CHARMM GUI files to work with OPC water model and CHARMM36
|
|
9
|
145
|
May 17, 2025
|
|
How to solve "No default bond types for interaction"
|
|
0
|
5
|
May 16, 2025
|
|
Topology NON-BONDING parametersproblems
|
|
0
|
12
|
May 16, 2025
|
|
Ligand Preparation for CHARMM36ff - Issue with halogens (Cl, Br)
|
|
0
|
23
|
May 13, 2025
|
|
Interpretation of Nonzero 14-LJ and 14-Coul Terms for Nonbonded Groups
|
|
7
|
40
|
May 8, 2025
|
|
How to add Cu2+ parameters to ions.itp in GAFF forcefield?
|
|
0
|
34
|
May 2, 2025
|
|
Simulating tripeptide with D-Amino Acids
|
|
0
|
28
|
April 23, 2025
|
|
Error in docked complex simulation
|
|
1
|
33
|
April 22, 2025
|