|
Energy minimization Tip4p/2005 water
|
|
0
|
3
|
October 22, 2021
|
|
Zero OPLS Lennard-Jones parameters for H atoms and overlapping atoms
|
|
2
|
19
|
October 21, 2021
|
|
CHARMM36 to GROMACS porting
|
|
5
|
82
|
October 21, 2021
|
|
[ atomtypes ] atom naming
|
|
4
|
33
|
October 21, 2021
|
|
Comparison between vdW-DF and LJ potential
|
|
0
|
7
|
October 18, 2021
|
|
ImportError: cannot import name 'gcd'
|
|
0
|
11
|
October 14, 2021
|
|
Does GROMOS96 53a6 support N-methyl acetamide?
|
|
1
|
15
|
October 13, 2021
|
|
Keeping carbonate planar without improper dihedrals
|
|
1
|
19
|
October 12, 2021
|
|
Atoms in molecule not bound by any form of constraint
|
|
1
|
37
|
October 8, 2021
|
|
Use of neutral phosphates in RNA residues
|
|
1
|
17
|
October 6, 2021
|
|
Compatibility between tip4p/2005 and charmm27.ff
|
|
0
|
17
|
October 5, 2021
|
|
Does GROMOS96 53a6 support NMA (N-methyl acetamide)?
|
|
0
|
14
|
October 4, 2021
|
|
CHARMM36 force field charge of ribonucleotide residues
|
|
1
|
26
|
September 28, 2021
|
|
Atomtype not found, but atom is in FF
|
|
2
|
36
|
September 23, 2021
|
|
Terminal capping topology: how rtp and *.tdb are combined?
|
|
2
|
34
|
September 21, 2021
|
|
Generation of topology for non-standard molecules
|
|
22
|
127
|
September 20, 2021
|
|
Invalid order for directive atomtypes
|
|
4
|
380
|
September 15, 2021
|
|
Syntax for selection in atom renaming (.arn) file
|
|
0
|
17
|
September 9, 2021
|
|
Forcefield for Gamma amino acids compatible with GROMACS 2019
|
|
0
|
43
|
September 4, 2021
|
|
Protein+one ligand+cofactor
|
|
1
|
33
|
August 31, 2021
|
|
Which force filed to use with iodide ions in water
|
|
0
|
26
|
August 28, 2021
|
|
Protein/Ligand complex amber production question
|
|
8
|
312
|
August 27, 2021
|
|
Force field of Mn3O4
|
|
0
|
32
|
August 27, 2021
|
|
Buckingham + 18-6 Lennard-Jones
|
|
2
|
59
|
August 25, 2021
|
|
Add TPO, SEP to Amber99SB-ildn (ffbonded)
|
|
2
|
57
|
August 24, 2021
|
|
Using diffrent 1-4 interaction scalings in one system
|
|
0
|
31
|
August 24, 2021
|
|
Capping residue ACE not recognised from the rtp file
|
|
13
|
294
|
August 23, 2021
|
|
Need a help regarding NBFIX function
|
|
3
|
85
|
August 21, 2021
|
|
Getting fluctuations in temperature during npt run
|
|
2
|
29
|
August 21, 2021
|
|
Editing .hdb file in CHARMM36 force field
|
|
2
|
46
|
August 5, 2021
|
