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Simulating tripeptide with D-Amino Acids
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0
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14
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April 23, 2025
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Error in docked complex simulation
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1
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30
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April 22, 2025
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CHARMM-GUI doesn't support selenocysteine (SEC), which is essential for my protein, and I need help
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0
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20
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April 18, 2025
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GolP FF Access
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0
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12
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April 17, 2025
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Interpretation of Nonzero 14-LJ and 14-Coul Terms for Nonbonded Groups
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0
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8
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April 15, 2025
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Gromacs Version
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5
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640
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December 6, 2024
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Topology for janus MoSSe
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0
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4
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April 14, 2025
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Modifying CHARMM GUI files to work with OPC water model and CHARMM36
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5
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37
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April 13, 2025
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PBC artifact issue
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0
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22
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April 12, 2025
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Pressure coupling in system of water and gas
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1
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13
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April 11, 2025
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Online server for MINFF and CLAYFF topologies
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0
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27
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April 10, 2025
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Adding new parameters to charmm ff for sulfur-carbon bond
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0
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9
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April 10, 2025
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Grompp handling bonded potentials
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14
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47
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April 7, 2025
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Tabulated potential tables
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5
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41
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April 7, 2025
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Adding lipid to residue topology database CHARMM36
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0
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7
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April 4, 2025
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Error for protein ligand simulation in gromacs
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0
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15
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April 1, 2025
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Converting HMMM solvent parameters for GROMACS
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0
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12
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March 31, 2025
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Issue with GROMACS Simulation : MDP file parameters and NVT equilibration
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4
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34
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March 31, 2025
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How to use the charmm36 force field parameters from CGenFF for ligand?
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2
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208
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March 24, 2025
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Head group atom of lipids
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4
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19
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March 17, 2025
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cGenFF Ligand topology
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0
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48
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March 13, 2025
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How to simulate d-amino acids
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10
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190
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March 8, 2025
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How to simulate d-amino acids by amber force field
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0
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15
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March 1, 2025
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Membrane Protein ligand simulation
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8
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128
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March 1, 2025
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Issue with pdb2gmx with MT-COX2 gene
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0
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18
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February 27, 2025
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Segmentation fault in MARTINI 2.2 with pulling
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16
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54
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February 12, 2025
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ACPYPE Error: Exceeded Max Bond Limit (512) – How can I fix this?
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0
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26
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February 12, 2025
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Fatal error: -ter not working, atom C1 not found
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0
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29
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February 10, 2025
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Is it possible to use different forcefields for protein and ligand when running MD simulation?
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0
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25
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February 10, 2025
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Adding a new residue covalently linked to multiple cysteines
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0
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27
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February 6, 2025
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