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Issues with MD Run and Fe Displacement in Hemoglobin Simulation
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0
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9
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November 23, 2024
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LINCS warning in coarse grained system
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1
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11
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November 18, 2024
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Energy minimization error sc-r-power = 48 not supported
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4
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584
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November 18, 2024
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pdb file name not consistent with force field
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1
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8
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November 14, 2024
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How to generate topology for a tripeptide molecule with protonation?
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0
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8
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November 13, 2024
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Generating topology for ligand having a hypervalent atom
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1
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12
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November 12, 2024
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How to add nonstandard residue or cofactor in charmm36 force field for protein topol.top
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2
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22
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November 12, 2024
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Help, adding PEG to my gro and top file-is not placed where it should be
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3
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24
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November 12, 2024
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Is it allowed to use Charmm36 ff on protein and GAFF on ligand?
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4
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52
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October 31, 2024
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Hbond issue with molecule
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1
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23
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October 30, 2024
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Gromacs error adding a number 1 to an atom
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8
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58
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October 29, 2024
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Fatal error: Syntax error - File ffnonbonded.itp, line 5 Last line read: '[ atomtypes ]' Invalid ord
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5
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21
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October 29, 2024
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I want to generate the system between short protein and membrane LIPID21 forcefield
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1
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16
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October 28, 2024
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How to keep S atom unprotonated in pdb2gmx?
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3
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26
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October 28, 2024
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No default Improper Dih. types
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3
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31
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October 24, 2024
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Files for running water simulation using Tip4p/2005 model
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6
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48
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October 23, 2024
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Error in the coordinate file sol.gro and topol.gro
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1
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33
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October 19, 2024
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Amber prep & frcmod files to gromacs
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8
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1950
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October 17, 2024
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Inserting a modified residue into a protein/DNA chain using pdb2gmx
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31
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1336
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October 16, 2024
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Are mdp parameters set based on force fields?
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1
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16
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October 16, 2024
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study of mixed clusters
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0
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11
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October 14, 2024
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Adding a covalent ligand to a force field
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18
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3663
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October 13, 2024
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PME for VdW pressure very low and denomination change
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5
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29
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October 11, 2024
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Error: No Default LJ-14 Types When Integrating Small Molecule into GAFF+GLYCAM System
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4
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43
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October 10, 2024
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Force field for Magnesium
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1
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30
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October 8, 2024
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Complex protein ligand Issue
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1
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28
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October 1, 2024
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Help with "Inconsistent Residue Types" Error
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1
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23
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September 30, 2024
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How to connect force fields in GROMACS
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0
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27
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September 23, 2024
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Protein+ATP+Mg complex Amber forcefield
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2
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789
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September 19, 2024
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Ligand protein docking with dimer protein
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0
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11
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September 16, 2024
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