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Martini v2 to Martini v3 atom types?
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0
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6
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September 28, 2023
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Error: atom C1 not found in buiding block 1MET while combining tdb and rtp
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2
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23
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September 26, 2023
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Error in python3 cgenff_charmm2gmx_py3_nx2.py ligand ligand_fix.mol2 ligand.str charmm36-jul2022.ff
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3
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132
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September 25, 2023
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Which strategy is best for creating topology files for large molecules?
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7
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151
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September 23, 2023
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Protein-ligand simulation gromacs 20.04
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0
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28
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September 23, 2023
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Multiscale hybrid simulations of all-atom and coarse-grained systems
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0
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27
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September 20, 2023
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Parameterise ligand with fluoride
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0
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23
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September 19, 2023
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PRODRG server is not working
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0
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38
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September 19, 2023
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Grmacs_Drude
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3
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44
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September 15, 2023
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Van der Waals potential scaling on selected atoms
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0
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36
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September 7, 2023
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Using tool of charmm2gmx
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2
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62
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August 30, 2023
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CHARMM Parameterization Failure?
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2
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54
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August 21, 2023
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Adding Copper into CHARMM ff
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0
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52
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August 21, 2023
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AttributeError: 'Graph' object has no attribute 'node'
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4
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559
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August 16, 2023
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How to perform MD simulation on boron nitride nanosheet on GROMACS using charmm force field
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1
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90
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August 15, 2023
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HEME-Histidine missing dihedrals
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3
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54
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August 14, 2023
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Editing .hdb file in CHARMM36 force field
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3
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610
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August 14, 2023
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Error in conversion of pdb file to gro file
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0
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49
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August 13, 2023
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Amber parmbsc1 + OL3
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1
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57
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August 11, 2023
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RNA force-field in amber14sb_parmbsc1
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0
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38
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August 7, 2023
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Flat-bottom potential renders an unstable system
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0
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58
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August 3, 2023
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CHARMM36m WYF parameters
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0
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68
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August 3, 2023
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Need help for neutralization of non-zero charge
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1
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48
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August 1, 2023
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Newest CHARMM36 port for GROMACS
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22
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7216
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August 1, 2023
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Universal forcefield
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0
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53
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July 26, 2023
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Difficulty in generating ION.tpr file using AMBER01 FF and SPC water model
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1
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62
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July 21, 2023
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Regarding residue not found in rtp
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1
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46
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July 20, 2023
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Urgent help: Error in user input:
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5
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84
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July 14, 2023
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Is there an especial force field for md simulation of biological systems without water molecules
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14
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164
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July 13, 2023
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Universal ForceField (UFF)
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4
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117
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July 11, 2023
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