Adding a new residue covalently linked to multiple cysteines
|
|
0
|
25
|
February 6, 2025
|
Understanding .hdb format
|
|
2
|
23
|
February 6, 2025
|
H-bond constraint
|
|
4
|
2006
|
February 6, 2025
|
Question about modification of forcefield for non-standard residues
|
|
0
|
15
|
February 5, 2025
|
How to simulate d-amino acids
|
|
12
|
95
|
February 4, 2025
|
Membrane Protein ligand simulation
|
|
7
|
54
|
February 3, 2025
|
CHARMM force field parameters for Ru(II)
|
|
0
|
30
|
January 29, 2025
|
Residue 'FE' not found in residue topology database
|
|
0
|
15
|
January 29, 2025
|
Resolving Charge Imbalance for CHARMM DNA Backbone Parameterization in GROMACS
|
|
2
|
16
|
January 28, 2025
|
Zero OPLS Lennard-Jones parameters for H atoms and overlapping atoms
|
|
5
|
793
|
January 24, 2025
|
Protonation States in the OPLS-AA Forcefield
|
|
0
|
9
|
January 24, 2025
|
How to perform md simulation on a protein structure which have a ca+ ions
|
|
0
|
13
|
January 23, 2025
|
Topology of an ACE-linked cyclic peptide with a free C-ter
|
|
0
|
13
|
January 23, 2025
|
Parametrization of DNA Backbone with Alkyl Chain Using CHARM and Non-Integer Charge Issue
|
|
0
|
7
|
January 22, 2025
|
DNA Backbone Parametrization and rtp File
|
|
1
|
33
|
January 20, 2025
|
NPT Step Issue with Protein 1QS4 (4 Waters and Mg²⁺ in Active Site)
|
|
4
|
27
|
January 22, 2025
|
How to use the charmm36 force field parameters from CGenFF for ligand?
|
|
1
|
67
|
January 21, 2025
|
Issue with pdb2gmx when peptide is capped
|
|
4
|
25
|
January 21, 2025
|
Questions About CHARMM36 Parameters for DNA Systems
|
|
2
|
31
|
January 17, 2025
|
Help, adding PEG to my gro and top file-is not placed where it should be
|
|
4
|
32
|
January 17, 2025
|
Chloroform as a solvent in Charmm36 force field
|
|
1
|
36
|
January 16, 2025
|
Estimated Oscillation Time period less than timestep
|
|
4
|
28
|
January 15, 2025
|
Does anyone have validated GAFF parameters for the PEG400?
|
|
0
|
4
|
January 13, 2025
|
Adding an organic molecule to OPLS-AA force field
|
|
0
|
27
|
January 11, 2025
|
Ion Parameters in Amber99bsc1 Force Field
|
|
0
|
7
|
January 10, 2025
|
On FF parameterization of molecules with non-zero valence
|
|
3
|
11
|
January 10, 2025
|
How to use Clay.ff with gromacs for molecular dynamics simulation of mica
|
|
2
|
24
|
January 8, 2025
|
Using the Martini3 Forcefield in pdb2gmx
|
|
2
|
38
|
January 7, 2025
|
Pressure off due missing LJ parameters
|
|
4
|
76
|
January 7, 2025
|
Charmm36 ff with PTM on GROMACS
|
|
3
|
20
|
January 5, 2025
|