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Difference between x2top and LigParGen ff generation (dodecane)
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1
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16
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April 26, 2024
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Running Simulations Using Files Generated from Martinize+Insane
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0
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10
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April 25, 2024
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amber14sb_OL15.ff correction in Dihedrals
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2
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672
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April 25, 2024
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How to add C2O or Cu2O in residuetypes.dat
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8
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187
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April 24, 2024
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Water molecules for ion coordination in simulation
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0
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25
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April 23, 2024
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Bond between protein and ligand
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4
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56
|
April 19, 2024
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Glycosylation Chain ( PTM) on a protein
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0
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30
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April 19, 2024
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Protein generated with CHARMM36 FF and membrane generated with Bilayer Builder CHARMGU don't match
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1
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28
|
April 18, 2024
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MD simulation of a bridging His coordinated to two ZN atoms
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4
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52
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April 18, 2024
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Lone pairs in ligand
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0
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28
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April 16, 2024
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About the water molecules
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14
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87
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April 15, 2024
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How to build 2Fe-2S cluster model for simulation?
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5
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323
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April 14, 2024
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CHARMM36 forcefield.itp vs local installation
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2
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67
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April 12, 2024
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Why is coulomb SR energy different sign using different forcefields?
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13
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151
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April 11, 2024
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How to use polarizable water in Martini3?
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2
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48
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April 11, 2024
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Is there any way to return the coarse-grained beads to atomsin the martini3 force field?
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0
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35
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April 11, 2024
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Does nrexcl parameter only apply to bonded system?
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0
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34
|
April 9, 2024
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How to add a new forcefield in Gromacs?
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1
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98
|
April 9, 2024
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While adding the force field parameter in dna aptamer
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3
|
121
|
April 6, 2024
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Alternative to CGenFF for generating large ligand topology
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4
|
724
|
April 6, 2024
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C-terminus protonation using PDB2GMX
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2
|
86
|
April 4, 2024
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Forecfield incorporation in gromacs
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10
|
152
|
April 3, 2024
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Average RMSD score 5-7 nm
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0
|
44
|
April 2, 2024
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Abnormally Large 2nd Moment of Acceleration Values (<U^2> = <F^2>/M^2)
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0
|
31
|
April 1, 2024
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Define the ion-water interactions
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0
|
50
|
April 1, 2024
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Add new parameters to [pairtypes] in ffnonbonded.itp
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0
|
42
|
March 28, 2024
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Core-shell model definition in Gromacs
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0
|
65
|
March 26, 2024
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How to use ligand parameter file generated by ffTK in GROMACS?
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5
|
72
|
March 25, 2024
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How to perform MD simulation on boron nitride nanosheet on GROMACS using charmm force field
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2
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436
|
March 22, 2024
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Position restraint out of bonds
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3
|
72
|
March 20, 2024
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