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Membrane Protein ligand simulation
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1
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18
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December 25, 2024
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How to use Clay.ff with gromacs for molecular dynamics simulation of mica
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0
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3
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December 22, 2024
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No default improper dihedral types in Amber ff14sb-OL21 for DNA simulations
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2
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26
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December 22, 2024
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Using the Martini3 Forcefield in pdb2gmx
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0
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12
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December 19, 2024
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Error in residue topology database
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1
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15
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December 19, 2024
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Error: Topol.top file doesn`t match solv.gro file
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1
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12
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December 18, 2024
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Easily lookup the origin of the opls_XXX atom types?
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1
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12
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December 18, 2024
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gmx_MMPBSA order of the molecules in the pdb file and topology file
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0
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7
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December 17, 2024
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Issues with MD Run and Fe Displacement in Hemoglobin Simulation
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4
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40
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December 13, 2024
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How to implement Stillinger-Weber (SW) Three-Body Interaction in GROMACS?
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1
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16
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December 11, 2024
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Chloroform as a solvent in Charmm36 force field
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0
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11
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December 11, 2024
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Effect of Forcefield/Water Model on Simulation Times (specifically with regard to amberff19sb/OPC)
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1
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30
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December 10, 2024
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How to simulate d-amino acids
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12
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54
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December 10, 2024
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Gromacs Version
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5
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488
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December 6, 2024
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MINFF: a new family of forcefields for minerals
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0
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15
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December 5, 2024
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CGenFF ERROR - attype warning: unknown sulfur type (SD) not supported; skipped molecule
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1
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25
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December 4, 2024
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Issue in generating topology files for protein with GDP residue
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0
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17
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December 4, 2024
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Issue in Generating topology file
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3
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27
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December 3, 2024
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How to add nonstandard residue or cofactor in charmm36 force field for protein topol.top
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11
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39
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December 2, 2024
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Parameterising a Morse potential
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3
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502
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December 2, 2024
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Pdb2gmx error: atom CB used in topology entry is not found in the input file
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1
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27
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November 30, 2024
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ERROR 164 [file topol.top, line 100195]: No default Ryckaert-Bell. types
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3
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14
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November 29, 2024
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Pdb/topology file for transition metal oxides for supercapacitor MD simulation
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0
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11
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November 25, 2024
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How to use brownian dynamics with gromacs
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3
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185
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November 25, 2024
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Choosing the constraints
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4
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586
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November 25, 2024
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LINCS warning in coarse grained system
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1
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20
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November 18, 2024
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Energy minimization error sc-r-power = 48 not supported
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4
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590
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November 18, 2024
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pdb file name not consistent with force field
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1
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12
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November 14, 2024
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How to generate topology for a tripeptide molecule with protonation?
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0
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9
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November 13, 2024
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Generating topology for ligand having a hypervalent atom
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1
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14
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November 12, 2024
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