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Installation of AMBER ff19SB on GROMACS 2024.1
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3
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21
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July 24, 2024
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Practical differences between A and V particle types
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0
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5
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July 23, 2024
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Covalent Protein-Ligand complex simulation
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0
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23
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July 22, 2024
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Positive potential during energy minimization
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0
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11
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July 22, 2024
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Atomtype not found but it is defined in forcefield files
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7
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614
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July 18, 2024
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Using TraPPE UA force field for Cyclopentane in Gromacs
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0
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16
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July 17, 2024
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Help on how to solve "atom N not found in building block 1ADE while combining tdb and rtp"
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9
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4181
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July 17, 2024
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Gromacs Turn off atoms
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0
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8
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July 14, 2024
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Problem with force field parameters for Metallprotein
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0
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15
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July 13, 2024
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How to decouple the Lennard-Jones (LJ) interaction between two particular atoms in a same molecule?
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0
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19
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July 11, 2024
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Conversion of sigma and epsilon values to C6 and C12 values
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1
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51
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July 10, 2024
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Forcefield of a constrained molcule
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8
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62
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July 9, 2024
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ImportError: cannot import name 'gcd' from 'fractions'
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9
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3907
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July 8, 2024
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Hdb and rtp file generation
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1
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39
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July 8, 2024
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53 particles communicated to PME rank 1 are more than 2/3 times the cut-off out of the domain decomp
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1
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30
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July 8, 2024
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Topol.top file not generating
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1
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35
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July 7, 2024
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Atom OP3 in residue DA 1 was not found in rtp entry DA5 with 30 atoms while sorting atoms
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2
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34
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July 5, 2024
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Force Extraction
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2
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36
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July 4, 2024
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Newest CHARMM36 port for GROMACS
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36
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13980
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July 2, 2024
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Forcefield parameters for selenocysteine
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0
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50
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July 1, 2024
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Creating topology for chimeric DNA/RNA strand
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5
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173
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June 29, 2024
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Gmx grompp -f minim.mdp -c DopGte.pdb -p topol.top -o dppc.tpr?
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14
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78
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June 27, 2024
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Variable scaling of 1-4 interactions with Amber FFs
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6
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72
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June 24, 2024
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Segmentation fault in polymer salt and water system
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1
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54
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June 22, 2024
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Comparing Interaction Energy Analysis: QM vs. Force Field Approaches
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1
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55
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June 21, 2024
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How to add new residue in the lipids.rtp in charmm27.ff?
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6
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65
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June 20, 2024
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Completing inter-monomer bonds
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2
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72
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June 18, 2024
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Error while running writing the topology
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2
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397
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June 18, 2024
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Simulation of a dizinc metallo protein
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2
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73
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June 14, 2024
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GROMACS parameters on HPC
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0
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85
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June 7, 2024
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