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Free Energy calculation for Protein ligand complex
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0
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14
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April 17, 2024
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Gmx angle during dPCA
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1
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16
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April 16, 2024
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Why is coulomb SR energy different sign using different forcefields?
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13
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142
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April 11, 2024
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Error "mismatch in the contents" in Gromacs
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7
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71
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April 10, 2024
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About the Radial distribution function
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0
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26
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April 10, 2024
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Wrong numbers of atoms in groups obtained with make_ndx
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5
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55
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April 10, 2024
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How do we compare density profiles when interfaces are not located at the same position in the box?
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0
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27
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April 9, 2024
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RDF suddenly drops from 1
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1
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46
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April 5, 2024
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How to compute properties in a spherical region
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0
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35
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April 4, 2024
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Modify gmx analysis code (gmx saxs) for OpenMP acceleration
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0
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34
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April 3, 2024
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Peptide moving out of the box during peptide-protein MD
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2
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55
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April 3, 2024
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Abnormally Large 2nd Moment of Acceleration Values (<U^2> = <F^2>/M^2)
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0
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27
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April 1, 2024
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Calculating zeta potential from 'potential.xvg'
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0
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40
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March 29, 2024
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Gmx densmap gives invalid next size error
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3
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55
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March 28, 2024
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On the calculation of the mean square displacement in the z direction
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1
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46
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March 27, 2024
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Gmx trjcat
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1
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53
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March 25, 2024
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Error in h-bond file (hbond.xvg) in Gromacs 2024-dev-20230329-26add465fa
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1
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80
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March 22, 2024
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Editing trajectory based on time
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1
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89
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March 21, 2024
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How to know which frame of trajectory has a minimum energy in free energy landscape analysis?
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3
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568
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March 20, 2024
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Viscosity of pure liquid
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9
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705
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March 19, 2024
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NAMD+MM_GBSA/PBSA for per residue energy decomposition
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0
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53
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March 16, 2024
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About the gmx angle command in gromacs
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2
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57
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March 15, 2024
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Coarse-grained md simulatioin
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2
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69
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March 14, 2024
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Using dynamic selections with tools such as trjconv
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11
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1009
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March 14, 2024
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Molar heat capacity - GMX dos
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0
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48
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March 13, 2024
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'gmx wham' counts wrong column number in the pull coordinate selection file
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3
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91
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March 13, 2024
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The mean square displacement is calculated by dividing the region
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6
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85
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March 12, 2024
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Index groups generated using GMX select do not consist of molecules
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1
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32
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March 12, 2024
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Gmx rdf and exclusions flag
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1
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66
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March 11, 2024
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Calculating Diffusion Coefficient of benzene using MDAnalysis
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1
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70
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March 10, 2024
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