|
How does gmx rms perform its calculation?
|
|
1
|
7
|
November 21, 2024
|
|
Does anyone know how to smooth data from tensile MD simulations?
|
|
6
|
36
|
November 15, 2024
|
|
How to calculate virial stress tensor in MD simulation?
|
|
0
|
6
|
November 14, 2024
|
|
Gromacs Mean Square Displacement (gmx_msd) issue
|
|
5
|
27
|
November 5, 2024
|
|
PBC leads to high ligand RMSD after unbinding
|
|
0
|
13
|
October 31, 2024
|
|
How to Calculate Energies for "Specific" Atoms?
|
|
2
|
21
|
October 30, 2024
|
|
Hbond issue with molecule
|
|
1
|
23
|
October 30, 2024
|
|
Atom **** in residue ASN 358 was not found in rtp entry ASN with 14 atoms while sorting atoms
|
|
4
|
16
|
October 27, 2024
|
|
Is it possible to calculate free energy landscape instead of umbrella sampling's PMF?
|
|
2
|
38
|
October 23, 2024
|
|
Post analysis of RDF/CN for specific z range
|
|
3
|
18
|
October 22, 2024
|
|
Distance between atom(s) in a protein and waters during a simulation
|
|
0
|
24
|
October 22, 2024
|
|
GROMACS benchmark on 33 GPUs
|
|
0
|
30
|
October 17, 2024
|
|
H-bond of Protein-Ligand Complex (Ligand-Water H bond)
|
|
0
|
13
|
October 15, 2024
|
|
How to construct suitable recombinant protein structure for molecular dynamics simulation?
|
|
0
|
13
|
October 14, 2024
|
|
Inter molecular rdf
|
|
0
|
8
|
October 12, 2024
|
|
Xpm2 output error with gromacs2019
|
|
0
|
11
|
October 11, 2024
|
|
Eneconv -dt and gmx energy: Data Points Not Skipped Properly
|
|
4
|
9
|
October 10, 2024
|
|
Select clustered residues of same type
|
|
1
|
28
|
October 8, 2024
|
|
Force field for Magnesium
|
|
1
|
30
|
October 8, 2024
|
|
Complex protein ligand Issue
|
|
1
|
27
|
October 1, 2024
|
|
GRINN Energy Scoring
|
|
4
|
381
|
September 26, 2024
|
|
Interaction energy calculation
|
|
0
|
17
|
September 26, 2024
|
|
Young's Modulus
|
|
1
|
29
|
September 26, 2024
|
|
How to understand the output after pulling force is applied?
|
|
11
|
96
|
September 20, 2024
|
|
Analyzing hydrogen bond (gmx make_ndx and gmx hbond)
|
|
0
|
24
|
September 20, 2024
|
|
Gromacs Hbdons
|
|
0
|
12
|
September 18, 2024
|
|
Time evolution of one replica with temperatures from REMD
|
|
3
|
314
|
September 17, 2024
|
|
How to calculate water density after removing PBC?
|
|
4
|
20
|
September 17, 2024
|
|
Umbrella Sampling Histogram wrong window distance
|
|
3
|
43
|
September 11, 2024
|
|
Combined analysis of independent AWH runs
|
|
6
|
36
|
September 11, 2024
|