|
Rotating protein in trajectory
|
|
4
|
20
|
April 29, 2025
|
|
Protein-Lipid system, protein keeps flipping or jumping
|
|
2
|
21
|
April 25, 2025
|
|
Is an RMSD value above 0.36 nm (apo-form) and 0.4 to 0.5 nm (complex-form) is acceptable?
|
|
0
|
9
|
April 23, 2025
|
|
Debye Method Implementation
|
|
0
|
16
|
April 22, 2025
|
|
Error in docked complex simulation
|
|
1
|
30
|
April 22, 2025
|
|
The options about xmax and xmin for gmx densmap
|
|
0
|
15
|
April 21, 2025
|
|
Equivalent to the old sas2mat
|
|
0
|
13
|
April 17, 2025
|
|
GROMACS Result Analysis. Potential Issues?
|
|
7
|
73
|
April 17, 2025
|
|
PBC Artifacts in 20 bp DNA System
|
|
0
|
5
|
April 16, 2025
|
|
Interpretation of Nonzero 14-LJ and 14-Coul Terms for Nonbonded Groups
|
|
0
|
8
|
April 15, 2025
|
|
Topology for janus MoSSe
|
|
0
|
4
|
April 14, 2025
|
|
listRanges does not have a first element with value 0
|
|
3
|
42
|
April 12, 2025
|
|
For two examples, the eigenvalues obtained from `g_covar` are all zeros
|
|
3
|
20
|
April 11, 2025
|
|
GROMACS RMSD Analysis: Understanding Non-Zero Initial Values
|
|
2
|
19
|
April 4, 2025
|
|
Segmentation fault (core dumped) for gmx covar
|
|
5
|
14
|
April 2, 2025
|
|
Error for protein ligand simulation in gromacs
|
|
0
|
15
|
April 1, 2025
|
|
How does "-[no]correct (no)" flag works in gmx potential tool?
|
|
10
|
102
|
March 28, 2025
|
|
MSD curve has a large non-linear part
|
|
5
|
37
|
March 26, 2025
|
|
How to use gmx polystat for MSID
|
|
3
|
18
|
March 26, 2025
|
|
Distance between COM HP-beta-cyclodextrin and Gliclazide
|
|
2
|
17
|
March 24, 2025
|
|
Ligand leaving binding pocket
|
|
15
|
169
|
March 23, 2025
|
|
Can we calculate the MSD by considering only the first portion of the MSD graph?
|
|
0
|
19
|
March 21, 2025
|
|
Increase in potential energy of peptide conformations Post MD run
|
|
4
|
25
|
March 18, 2025
|
|
Head group atom of lipids
|
|
4
|
19
|
March 17, 2025
|
|
In gmx wham, what is profile.xvg?
|
|
0
|
21
|
March 11, 2025
|
|
Change in position of Histidine residue lead to difference in columb interaction energy
|
|
0
|
4
|
March 3, 2025
|
|
How gmx RMS read the input of group selection
|
|
1
|
16
|
March 1, 2025
|
|
Failed to run long trajectory to compute MSD
|
|
0
|
9
|
February 27, 2025
|
|
How to calculate Pairwise RMSD between two trajectories using `gmx rms`
|
|
1
|
38
|
February 22, 2025
|
|
Very high solvation free energy value
|
|
1
|
31
|
February 19, 2025
|