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1-4 interactions not tallying
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0
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4
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December 20, 2024
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Invalid index group references encountered
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2
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6
|
December 19, 2024
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How to calculate electrostatic and van der waals interaction between two specific groups in gromacs?
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2
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15
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December 19, 2024
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Error: Topol.top file doesn`t match solv.gro file
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1
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11
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December 18, 2024
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gmx_MMPBSA order of the molecules in the pdb file and topology file
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0
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6
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December 17, 2024
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Simulating the interaction between cellulose (polysaccharide) and proteins
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0
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5
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December 17, 2024
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How to calculate hydrophobic interactions in gromacs?
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0
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6
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December 16, 2024
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About calculation of residence time in GMX
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1
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7
|
December 15, 2024
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How can we calculate energy input/output from multiple thermostats in a system?
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2
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10
|
December 12, 2024
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Are the PCA matrices in GROMACS normalized to the same range? That is, are they comparable?
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0
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9
|
December 4, 2024
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Gmx energy for solubility parameter
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1
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12
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December 4, 2024
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Issues replacing gmx saxs with gmx scattering
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0
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10
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November 27, 2024
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dRama: Differential Ramachandran Plot as a Tool to Analyze Subtle Changes in Protein Structure
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0
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50
|
November 26, 2024
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How does gmx rms perform its calculation?
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2
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27
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November 22, 2024
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Does anyone know how to smooth data from tensile MD simulations?
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6
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41
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November 15, 2024
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How to calculate virial stress tensor in MD simulation?
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0
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15
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November 14, 2024
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Gromacs Mean Square Displacement (gmx_msd) issue
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5
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33
|
November 5, 2024
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PBC leads to high ligand RMSD after unbinding
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0
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17
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October 31, 2024
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How to Calculate Energies for "Specific" Atoms?
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2
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22
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October 30, 2024
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Hbond issue with molecule
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1
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36
|
October 30, 2024
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Atom **** in residue ASN 358 was not found in rtp entry ASN with 14 atoms while sorting atoms
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4
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20
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October 27, 2024
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Is it possible to calculate free energy landscape instead of umbrella sampling's PMF?
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2
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46
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October 23, 2024
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Post analysis of RDF/CN for specific z range
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3
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24
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October 22, 2024
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Distance between atom(s) in a protein and waters during a simulation
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0
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29
|
October 22, 2024
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GROMACS benchmark on 33 GPUs
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0
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45
|
October 17, 2024
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H-bond of Protein-Ligand Complex (Ligand-Water H bond)
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0
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21
|
October 15, 2024
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How to construct suitable recombinant protein structure for molecular dynamics simulation?
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0
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13
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October 14, 2024
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Inter molecular rdf
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0
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10
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October 12, 2024
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Xpm2 output error with gromacs2019
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0
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13
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October 11, 2024
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Eneconv -dt and gmx energy: Data Points Not Skipped Properly
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4
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11
|
October 10, 2024
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