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Gromacs 2023: Segmentation fault with gmx anaeig (but no problem with Gromacs 2022.4)
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4
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20
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March 28, 2023
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Gmx angle error
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0
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16
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March 27, 2023
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How to check exact partial charges on a surfactant by gromacs
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1
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17
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March 27, 2023
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Unevern spikes in RMSD graphs after MD simulations
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4
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47
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March 27, 2023
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Pronlem in using gmx msd and mol option to find msd for COM
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1
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17
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March 26, 2023
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Ligand moving out after no pbc gmx trjconv -s md_0_10.tpr -f md_0_10.xtc -o md_0_10_noPBC.xtc,reason
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2
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302
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September 8, 2021
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How to calculate radius of the curvature for simulated CG model membrane?
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0
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11
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March 24, 2023
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Bond Dissappearing in VMD
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2
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24
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March 22, 2023
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Interaction and Binding energy
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1
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32
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March 20, 2023
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Per-group virial
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3
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48
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March 20, 2023
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How to plot pulling work and binding free energy after SMD?
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2
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58
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March 19, 2023
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How to convert gromacs trajectory to lammps to do Flory–Huggins interaction parameter?
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0
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46
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March 15, 2023
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Energy minimization not happening
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6
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73
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March 14, 2023
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Gmx msd experiences error while reading index file
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0
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28
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March 11, 2023
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Problem with gmx energy
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8
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545
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March 10, 2023
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Gmx mindist freezes while reading input
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1
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30
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March 10, 2023
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How to choose the correct options for the gmx distance analysis?
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1
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48
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March 3, 2023
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Schrodinger Simulations Interactions Diagram alternative for GROMACS MD trajectories
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1
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43
|
February 28, 2023
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MMPBSA Energy Scoring Error
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0
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29
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February 26, 2023
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Gmx editconf -pbc not removing periodicity
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1
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67
|
February 17, 2023
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How to find contacts/dist between a specified atom/residue and unspecified lipid residues?
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2
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207
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February 17, 2023
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Simulation Breaks the system (separates both the chains of the Antibody)
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9
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83
|
February 16, 2023
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Relation of velocity generation wrt tc-grps
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7
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65
|
February 15, 2023
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Calculating RDF in a specific region of the box
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0
|
28
|
February 14, 2023
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Analysis energy vdw and coulomb electrostatic for protein
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1
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54
|
February 9, 2023
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SASA per residue
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1
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61
|
February 9, 2023
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Way to measure nber of contacts and duration of each contact of a pair of species over a trajectory?
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1
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123
|
February 9, 2023
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What conclusions can we made from principal component analysis?
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0
|
62
|
February 6, 2023
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How can I get a topology file with full parameters expanded?
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2
|
122
|
February 3, 2023
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Problem during the Protein-Ligand Analysis gmx distance command
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0
|
48
|
February 2, 2023
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