GROMACS version:
GROMACS modification: Yes/No
Hi everyone! I am trying to compute the size distribution of a protein cluster using the following command -
gmx clustsize -f *xtc -s *tpr -n *ndx -cut 2.5 -o clust.xpm -nc nclust.xvg -mc mclust.xvg -tu ns
However, I keep getting the same error as shown.
Why does it show that all atoms are part of a single cluster? Visually I can see there are two clusters. I have tried with different cut offs too. Are there any other tools to get the size distributions of a protein cluster?
Any help is appreciated. Thank you.