|
Jumping residue after PBC removal
|
|
13
|
93
|
August 26, 2024
|
|
System getting out of box upon simulation
|
|
1
|
26
|
August 6, 2024
|
|
Fix two separate DNA strands after simulation using -pbc cluster
|
|
0
|
6
|
July 22, 2024
|
|
Manual Error Regarding Rhombic Dodecahedral Cell?
|
|
1
|
102
|
April 30, 2024
|
|
Trajectory slicing changes 3D coordinates
|
|
1
|
148
|
March 7, 2024
|
|
Is PBC correction necessary for some particular type of analysis?
|
|
2
|
885
|
May 30, 2023
|
|
Unification of box shapes in molecular simulations
|
|
2
|
446
|
March 16, 2023
|
|
PBC correction doesn't remove all PBCs
|
|
0
|
513
|
November 2, 2022
|
|
Remove PBC effects on membrane+protein+ligand
|
|
4
|
544
|
October 20, 2022
|
|
Making densities (multimers/aggregates/objects) whole over PBC
|
|
0
|
643
|
February 9, 2022
|
|
Why does molecules in MD trajectory go out of the pbc box in VMD / pymol?
|
|
1
|
833
|
January 21, 2022
|
|
Pbc correction
|
|
1
|
438
|
November 12, 2021
|
|
Remove PBC
|
|
1
|
634
|
September 27, 2021
|
|
Starting simulation from another trajectory using -t grompp option - How are PBC treated?
|
|
3
|
707
|
March 30, 2021
|