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PBC effect on RMSD calculation
|
|
2
|
27
|
October 1, 2025
|
|
PBC correction for drug–lipid bilayer system (GROMACS 2024.5)
|
|
0
|
35
|
August 19, 2025
|
|
Error running Periodic graphene with mpi threads
|
|
0
|
15
|
May 29, 2025
|
|
PBC artifact issue
|
|
0
|
39
|
April 12, 2025
|
|
Issue with correcting PBC for DNA Separation in GROMACS
|
|
7
|
101
|
January 15, 2025
|
|
Handling of PBCs with multiple peptides
|
|
2
|
28
|
January 7, 2025
|
|
Drift of the system in the periodic box during simulations
|
|
2
|
78
|
December 17, 2024
|
|
System getting out of box upon simulation
|
|
2
|
196
|
October 29, 2024
|
|
Jumping residue after PBC removal
|
|
13
|
553
|
August 26, 2024
|
|
Fix two separate DNA strands after simulation using -pbc cluster
|
|
0
|
38
|
July 22, 2024
|
|
Manual Error Regarding Rhombic Dodecahedral Cell?
|
|
1
|
140
|
April 30, 2024
|
|
Trajectory slicing changes 3D coordinates
|
|
1
|
165
|
March 7, 2024
|
|
Is PBC correction necessary for some particular type of analysis?
|
|
2
|
1090
|
May 30, 2023
|
|
Unification of box shapes in molecular simulations
|
|
2
|
530
|
March 16, 2023
|
|
PBC correction doesn't remove all PBCs
|
|
0
|
648
|
November 2, 2022
|
|
Remove PBC effects on membrane+protein+ligand
|
|
4
|
642
|
October 20, 2022
|
|
Making densities (multimers/aggregates/objects) whole over PBC
|
|
0
|
701
|
February 9, 2022
|
|
Why does molecules in MD trajectory go out of the pbc box in VMD / pymol?
|
|
1
|
1055
|
January 21, 2022
|
|
Pbc correction
|
|
1
|
449
|
November 12, 2021
|
|
Remove PBC
|
|
1
|
695
|
September 27, 2021
|
|
Starting simulation from another trajectory using -t grompp option - How are PBC treated?
|
|
3
|
743
|
March 30, 2021
|