Fit trajectories (trjconv) issue
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2
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500
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March 15, 2023
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Trjconv -dt does not output frames at correct times
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0
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23
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March 2, 2023
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Gmx trjconv
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1
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44
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February 17, 2023
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Trjconv mismatch in the contents of your -f, -s and/or -n files, but using the same index
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1
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47
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January 20, 2023
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Error in gmx do_dssp
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8
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264
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December 11, 2022
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Visualizing clusters of molecules with trjconv with pbc
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14
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939
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November 17, 2022
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PBC correction doesn't remove all PBCs
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0
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73
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November 2, 2022
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Trajectory extraction of multimeric system
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6
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345
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October 29, 2022
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Potential trjconv issue? - dichloromethane molecule with broken carbon-chlorine bonds
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2
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96
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October 10, 2022
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RDF and PBC corrections
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3
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113
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October 1, 2022
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Strip solvent from trajectory - Cannot do both runtime modification and charge-zeroing/index
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6
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336
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September 12, 2022
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Salt dipoles (Mg-SO4) from XTC format shows zero for free ions
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1
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95
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August 10, 2022
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Trjconv error
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1
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492
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June 22, 2022
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Problem while combining ndx index file with snapshots in trjconv
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0
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159
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June 3, 2022
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Trjconv options to extract frames from long trajectory
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2
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653
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May 31, 2022
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How to trim .xtc file?
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2
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178
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May 11, 2022
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Protein come out of the box but trjconv command didn't fix the problem
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5
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1025
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May 3, 2022
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Extraction of trajectory for multimeric system
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9
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563
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April 8, 2022
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Trajectory lists previous frame than what is mentioned in *.ndx
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2
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203
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April 7, 2022
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Ligand gets fragmented after recentering / Need help
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1
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129
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April 6, 2022
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Removing PBC for peptide-lipid system
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4
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607
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February 21, 2022
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I want to remove the periodicity of the system but I don't want to bring my gold slab at the center
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0
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148
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February 9, 2022
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Why does molecules in MD trajectory go out of the pbc box in VMD / pymol?
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1
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279
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January 21, 2022
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Extending the simulation with new mdp file
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2
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312
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January 20, 2022
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Trjconv does outputs structure of only monomer in case of dimeric protein
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9
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401
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January 6, 2022
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Centering a protein in MD production run
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5
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346
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October 9, 2021
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Remove PBC
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1
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223
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September 27, 2021
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Selection in control volume
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0
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132
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September 8, 2021
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Gmx trjconv for 'selected' trajectories
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6
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333
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August 18, 2021
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Center solvent in the centre of the box
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6
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725
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June 18, 2021
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