Topics tagged gmx-trjconv

Topic	Replies	Views	Activity
Fit trajectories (trjconv) issue User discussions gmx-trjconv	2	500	March 15, 2023
Trjconv -dt does not output frames at correct times User discussions gmx-trjconv	0	23	March 2, 2023
Gmx trjconv User discussions mdp-parameters , mdrun , gmx-trjconv , gmx-distance	1	44	February 17, 2023
Trjconv mismatch in the contents of your -f, -s and/or -n files, but using the same index User discussions gmx-trjconv	1	47	January 20, 2023
Error in gmx do_dssp User discussions gmx-trjconv	8	264	December 11, 2022
Visualizing clusters of molecules with trjconv with pbc User discussions gmx-trjconv	14	939	November 17, 2022
PBC correction doesn't remove all PBCs User discussions pbc , gmx-trjconv	0	73	November 2, 2022
Trajectory extraction of multimeric system User discussions analysis-tools , gmx-trjconv	6	345	October 29, 2022
Potential trjconv issue? - dichloromethane molecule with broken carbon-chlorine bonds User discussions gmx-trjconv	2	96	October 10, 2022
RDF and PBC corrections User discussions analysis-tools , gmx-trjconv	3	113	October 1, 2022
Strip solvent from trajectory - Cannot do both runtime modification and charge-zeroing/index User discussions mdrun , gmx-trjconv	6	336	September 12, 2022
Salt dipoles (Mg-SO4) from XTC format shows zero for free ions User discussions mdrun , analysis-tools , gmx-trjconv	1	95	August 10, 2022
Trjconv error User discussions gmx-trjconv	1	492	June 22, 2022
Problem while combining ndx index file with snapshots in trjconv User discussions gmx-trjconv	0	159	June 3, 2022
Trjconv options to extract frames from long trajectory User discussions gmx-trjconv	2	653	May 31, 2022
How to trim .xtc file? User discussions gmx-trjconv	2	178	May 11, 2022
Protein come out of the box but trjconv command didn't fix the problem User discussions mdrun , gmx-trjconv	5	1025	May 3, 2022
Extraction of trajectory for multimeric system User discussions analysis-tools , replica-exchange , gmx-trjconv	9	563	April 8, 2022
Trajectory lists previous frame than what is mentioned in *.ndx User discussions gmx-trjconv	2	203	April 7, 2022
Ligand gets fragmented after recentering / Need help User discussions gmx-trjconv	1	129	April 6, 2022
Removing PBC for peptide-lipid system User discussions gmx-trjconv	4	607	February 21, 2022
I want to remove the periodicity of the system but I don't want to bring my gold slab at the center User discussions analysis-tools , gmx-trjconv	0	148	February 9, 2022
Why does molecules in MD trajectory go out of the pbc box in VMD / pymol? User discussions pbc , gmx-trjconv	1	279	January 21, 2022
Extending the simulation with new mdp file User discussions mdrun , gmx-trjconv	2	312	January 20, 2022
Trjconv does outputs structure of only monomer in case of dimeric protein User discussions gmx-trjconv	9	401	January 6, 2022
Centering a protein in MD production run User discussions gmx-trjconv	5	346	October 9, 2021
Remove PBC User discussions pbc , gmx-trjconv	1	223	September 27, 2021
Selection in control volume User discussions gmx-trjconv	0	132	September 8, 2021
Gmx trjconv for 'selected' trajectories User discussions gmx-trjconv	6	333	August 18, 2021
Center solvent in the centre of the box User discussions gmx-trjconv	6	725	June 18, 2021