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Gromacs Hbdons
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0
|
11
|
September 18, 2024
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Error when converting files between gromacs 2019.6 and gromacs 5.1.5
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5
|
15
|
September 4, 2024
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Gmx covar: error due to the PBC
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|
18
|
37
|
August 28, 2024
|
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Jumping residue after PBC removal
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13
|
93
|
August 26, 2024
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Using pdb2gmx as a lib
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0
|
13
|
August 20, 2024
|
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Using frame numbers from index file for naming output files
|
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1
|
69
|
June 30, 2024
|
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Saving velocities and forces for a subset of the trajectory
|
|
1
|
69
|
June 3, 2024
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Protein come out of the box but trjconv command didn't fix the problem
|
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9
|
3470
|
April 3, 2024
|
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Trajectory slicing changes 3D coordinates
|
|
1
|
148
|
March 7, 2024
|
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Inquiry Regarding Differences in Protein Centering Behavior between Amber and GROMACS
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|
5
|
222
|
February 19, 2024
|
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Removal of one leaflet causing errors in trajectory
|
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3
|
111
|
February 14, 2024
|
|
How to centralize membrane on Z = 0
|
|
2
|
207
|
February 5, 2024
|
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Trjconv ignoring chainIDs (molblock) from TPR
|
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0
|
118
|
January 23, 2024
|
|
RMSD calculation error
|
|
1
|
193
|
December 6, 2023
|
|
How to fix RMSD analysis results?
|
|
7
|
470
|
November 5, 2023
|
|
Problem for gmx trjconv
|
|
1
|
690
|
October 11, 2023
|
|
Error in recentering and rewrapping coordinates
|
|
3
|
308
|
September 25, 2023
|
|
Cannot make protein whole
|
|
1
|
280
|
July 7, 2023
|
|
Is PBC correction necessary for some particular type of analysis?
|
|
2
|
885
|
May 30, 2023
|
|
Error when using a bash loop
|
|
1
|
302
|
May 19, 2023
|
|
PBC correction during Umbrella sampling configuration generation
|
|
2
|
261
|
May 19, 2023
|
|
Trjconv not writing chain identifiers anymore (since ca. v2019)
|
|
4
|
393
|
May 2, 2023
|
|
Fit trajectories (trjconv) issue
|
|
2
|
1188
|
March 15, 2023
|
|
Trjconv -dt does not output frames at correct times
|
|
0
|
311
|
March 2, 2023
|
|
Gmx trjconv
|
|
1
|
555
|
February 17, 2023
|
|
Error in gmx do_dssp
|
|
8
|
1770
|
December 11, 2022
|
|
Visualizing clusters of molecules with trjconv with pbc
|
|
14
|
2563
|
November 17, 2022
|
|
PBC correction doesn't remove all PBCs
|
|
0
|
513
|
November 2, 2022
|
|
Trajectory extraction of multimeric system
|
|
6
|
968
|
October 29, 2022
|
|
Potential trjconv issue? - dichloromethane molecule with broken carbon-chlorine bonds
|
|
2
|
453
|
October 10, 2022
|