Trajectory slicing changes 3D coordinates
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1
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41
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March 7, 2024
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Inquiry Regarding Differences in Protein Centering Behavior between Amber and GROMACS
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5
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98
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February 19, 2024
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Removal of one leaflet causing errors in trajectory
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3
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40
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February 14, 2024
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How to centralize membrane on Z = 0
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2
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84
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February 5, 2024
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Trjconv ignoring chainIDs (molblock) from TPR
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0
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40
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January 23, 2024
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RMSD calculation error
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1
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108
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December 6, 2023
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How to fix RMSD analysis results?
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7
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236
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November 5, 2023
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Problem for gmx trjconv
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1
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323
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October 11, 2023
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Error in recentering and rewrapping coordinates
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3
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206
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September 25, 2023
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Cannot make protein whole
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1
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209
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July 7, 2023
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Is PBC correction necessary for some particular type of analysis?
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2
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578
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May 30, 2023
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Protein come out of the box but trjconv command didn't fix the problem
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8
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2565
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May 24, 2023
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Error when using a bash loop
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1
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232
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May 19, 2023
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PBC correction during Umbrella sampling configuration generation
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2
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184
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May 19, 2023
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Trjconv not writing chain identifiers anymore (since ca. v2019)
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4
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289
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May 2, 2023
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Fit trajectories (trjconv) issue
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2
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1033
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March 15, 2023
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Trjconv -dt does not output frames at correct times
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0
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227
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March 2, 2023
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Gmx trjconv
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1
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455
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February 17, 2023
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Trjconv mismatch in the contents of your -f, -s and/or -n files, but using the same index
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1
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461
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January 20, 2023
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Error in gmx do_dssp
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8
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1291
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December 11, 2022
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Visualizing clusters of molecules with trjconv with pbc
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14
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2026
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November 17, 2022
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PBC correction doesn't remove all PBCs
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0
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344
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November 2, 2022
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Trajectory extraction of multimeric system
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6
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733
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October 29, 2022
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Potential trjconv issue? - dichloromethane molecule with broken carbon-chlorine bonds
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2
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391
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October 10, 2022
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RDF and PBC corrections
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3
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630
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October 1, 2022
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Strip solvent from trajectory - Cannot do both runtime modification and charge-zeroing/index
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6
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883
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September 12, 2022
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Salt dipoles (Mg-SO4) from XTC format shows zero for free ions
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1
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287
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August 10, 2022
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Trjconv error
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1
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1087
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June 22, 2022
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Problem while combining ndx index file with snapshots in trjconv
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0
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436
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June 3, 2022
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Trjconv options to extract frames from long trajectory
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2
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2291
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May 31, 2022
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