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How to trim .xtc file?
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2
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36
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May 11, 2022
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Protein come out of the box but trjconv command didn't fix the problem
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5
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140
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May 3, 2022
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Trajectory extraction of multimeric system
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4
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53
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April 22, 2022
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Visualizing clusters of molecules with trjconv with pbc
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13
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245
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April 16, 2022
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Extraction of trajectory for multimeric system
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9
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103
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April 8, 2022
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Trajectory lists previous frame than what is mentioned in *.ndx
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2
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36
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April 7, 2022
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Ligand gets fragmented after recentering / Need help
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1
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33
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April 6, 2022
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Removing PBC for peptide-lipid system
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4
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66
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February 21, 2022
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I want to remove the periodicity of the system but I don't want to bring my gold slab at the center
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0
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51
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February 9, 2022
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Why does molecules in MD trajectory go out of the pbc box in VMD / pymol?
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1
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82
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January 21, 2022
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Extending the simulation with new mdp file
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2
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106
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January 20, 2022
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Trjconv does outputs structure of only monomer in case of dimeric protein
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9
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118
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January 6, 2022
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Centering a protein in MD production run
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5
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143
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October 9, 2021
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Remove PBC
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1
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96
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September 27, 2021
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Selection in control volume
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0
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65
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September 8, 2021
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Gmx trjconv for 'selected' trajectories
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6
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173
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August 18, 2021
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Center solvent in the centre of the box
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6
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307
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June 18, 2021
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Fit trajectories (trjconv) issue
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1
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277
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April 26, 2021
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How to use gmx trjconv to extract the trajectory only for the protein?
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3
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591
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March 18, 2021
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Recentering the protein and extracting frames
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1
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334
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March 14, 2021
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