|
Removing PBC for peptide-lipid system
|
|
8
|
1915
|
November 3, 2024
|
|
Gmx trjconv Index Error
|
|
7
|
43
|
October 31, 2024
|
|
Gromacs Hbdons
|
|
0
|
13
|
September 18, 2024
|
|
Error when converting files between gromacs 2019.6 and gromacs 5.1.5
|
|
5
|
20
|
September 4, 2024
|
|
Gmx covar: error due to the PBC
|
|
18
|
65
|
August 28, 2024
|
|
Jumping residue after PBC removal
|
|
13
|
176
|
August 26, 2024
|
|
Using pdb2gmx as a lib
|
|
0
|
14
|
August 20, 2024
|
|
Using frame numbers from index file for naming output files
|
|
1
|
72
|
June 30, 2024
|
|
Saving velocities and forces for a subset of the trajectory
|
|
1
|
76
|
June 3, 2024
|
|
Protein come out of the box but trjconv command didn't fix the problem
|
|
9
|
3647
|
April 3, 2024
|
|
Trajectory slicing changes 3D coordinates
|
|
1
|
154
|
March 7, 2024
|
|
Inquiry Regarding Differences in Protein Centering Behavior between Amber and GROMACS
|
|
5
|
226
|
February 19, 2024
|
|
Removal of one leaflet causing errors in trajectory
|
|
3
|
113
|
February 14, 2024
|
|
How to centralize membrane on Z = 0
|
|
2
|
241
|
February 5, 2024
|
|
Trjconv ignoring chainIDs (molblock) from TPR
|
|
0
|
120
|
January 23, 2024
|
|
RMSD calculation error
|
|
1
|
205
|
December 6, 2023
|
|
How to fix RMSD analysis results?
|
|
7
|
501
|
November 5, 2023
|
|
Problem for gmx trjconv
|
|
1
|
719
|
October 11, 2023
|
|
Error in recentering and rewrapping coordinates
|
|
3
|
322
|
September 25, 2023
|
|
Cannot make protein whole
|
|
1
|
291
|
July 7, 2023
|
|
Is PBC correction necessary for some particular type of analysis?
|
|
2
|
927
|
May 30, 2023
|
|
Error when using a bash loop
|
|
1
|
304
|
May 19, 2023
|
|
PBC correction during Umbrella sampling configuration generation
|
|
2
|
267
|
May 19, 2023
|
|
Trjconv not writing chain identifiers anymore (since ca. v2019)
|
|
4
|
416
|
May 2, 2023
|
|
Fit trajectories (trjconv) issue
|
|
2
|
1229
|
March 15, 2023
|
|
Trjconv -dt does not output frames at correct times
|
|
0
|
315
|
March 2, 2023
|
|
Gmx trjconv
|
|
1
|
576
|
February 17, 2023
|
|
Error in gmx do_dssp
|
|
8
|
1830
|
December 11, 2022
|
|
Visualizing clusters of molecules with trjconv with pbc
|
|
14
|
2711
|
November 17, 2022
|
|
PBC correction doesn't remove all PBCs
|
|
0
|
543
|
November 2, 2022
|