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Forces have not converged during energy minimization
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|
0
|
27
|
May 18, 2025
|
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Error during energy minimization
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|
4
|
43
|
April 15, 2025
|
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How to run a molecule which has O+ in it?
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0
|
18
|
February 12, 2025
|
|
The first step of energy minimization cannot be carried out
|
|
0
|
23
|
January 23, 2025
|
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Lipid membrane energy minimization error
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|
0
|
34
|
December 1, 2024
|
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Error Coordinat not matching gromacs
|
|
32
|
311
|
October 30, 2024
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|
I tried to perform energy minimization using "http://www.mdtutorials.com/gmx/lysozyme/05_EM.html"
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|
1
|
20
|
October 5, 2024
|
|
Second minimization
|
|
1
|
17
|
August 28, 2024
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Distortion of My nucleosome structure while energy minimization
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|
2
|
19
|
August 26, 2024
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|
Issue of High Potential Energy on Running Minimization
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|
22
|
993
|
August 20, 2024
|
|
Fatal Error topol.tpr file not found
|
|
1
|
108
|
August 16, 2024
|
|
Atomic overlap occurs in energy minimization
|
|
7
|
247
|
August 14, 2024
|
|
Minimization issue
|
|
4
|
58
|
August 8, 2024
|
|
Why membrane rupture durning the energy minimization?
|
|
2
|
27
|
July 29, 2024
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|
Step 13 and step 28: One or more water molecules can not be settled
|
|
1
|
205
|
July 14, 2024
|
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I'm getting error as Floating point exception (core dumped) during energy minimization
|
|
11
|
645
|
June 20, 2024
|
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Hydrogen atom forming more than 1 bond during energy minimization
|
|
3
|
71
|
June 8, 2024
|
|
Why is coulomb SR energy different sign using different forcefields?
|
|
13
|
654
|
April 11, 2024
|
|
Error energy minimization - Martini
|
|
1
|
387
|
March 22, 2024
|
|
Why minimization becomes inf?
|
|
2
|
139
|
March 4, 2024
|
|
Slightly negative energy minimization value
|
|
3
|
341
|
November 21, 2023
|
|
Minimization curve
|
|
2
|
271
|
November 20, 2023
|
|
Error in the EM run
|
|
2
|
314
|
November 14, 2023
|
|
Fatal error: step 22: water molecules starting at atom 7488 can not be settled?
|
|
1
|
269
|
October 4, 2023
|
|
Ligand restraints
|
|
0
|
178
|
July 3, 2023
|
|
Energy minimization works with steepest descent but not conjugate gradient
|
|
3
|
1711
|
June 22, 2023
|
|
Guest molecules leaving hydrate even w/ restraints
|
|
0
|
363
|
May 25, 2023
|
|
ERROR No such moleculetype NA
|
|
14
|
4993
|
May 12, 2023
|
|
Tutorial 2: KALP15 in DPPC EM problem
|
|
1
|
993
|
May 3, 2023
|
|
'topol' does not exist or is not accessible
|
|
1
|
2044
|
April 2, 2023
|