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Forces have not converged during energy minimization
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|
0
|
17
|
May 18, 2025
|
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Error during energy minimization
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|
4
|
39
|
April 15, 2025
|
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How to run a molecule which has O+ in it?
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0
|
13
|
February 12, 2025
|
|
The first step of energy minimization cannot be carried out
|
|
0
|
11
|
January 23, 2025
|
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Lipid membrane energy minimization error
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0
|
29
|
December 1, 2024
|
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Error Coordinat not matching gromacs
|
|
32
|
239
|
October 30, 2024
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|
I tried to perform energy minimization using "http://www.mdtutorials.com/gmx/lysozyme/05_EM.html"
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|
1
|
19
|
October 5, 2024
|
|
Second minimization
|
|
1
|
16
|
August 28, 2024
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Distortion of My nucleosome structure while energy minimization
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|
2
|
18
|
August 26, 2024
|
|
Issue of High Potential Energy on Running Minimization
|
|
22
|
921
|
August 20, 2024
|
|
Fatal Error topol.tpr file not found
|
|
1
|
98
|
August 16, 2024
|
|
Atomic overlap occurs in energy minimization
|
|
7
|
204
|
August 14, 2024
|
|
Minimization issue
|
|
4
|
50
|
August 8, 2024
|
|
Why membrane rupture durning the energy minimization?
|
|
2
|
21
|
July 29, 2024
|
|
Step 13 and step 28: One or more water molecules can not be settled
|
|
1
|
197
|
July 14, 2024
|
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I'm getting error as Floating point exception (core dumped) during energy minimization
|
|
11
|
586
|
June 20, 2024
|
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Hydrogen atom forming more than 1 bond during energy minimization
|
|
3
|
68
|
June 8, 2024
|
|
Why is coulomb SR energy different sign using different forcefields?
|
|
13
|
602
|
April 11, 2024
|
|
Error energy minimization - Martini
|
|
1
|
349
|
March 22, 2024
|
|
Why minimization becomes inf?
|
|
2
|
132
|
March 4, 2024
|
|
Slightly negative energy minimization value
|
|
3
|
326
|
November 21, 2023
|
|
Minimization curve
|
|
2
|
255
|
November 20, 2023
|
|
Error in the EM run
|
|
2
|
302
|
November 14, 2023
|
|
Fatal error: step 22: water molecules starting at atom 7488 can not be settled?
|
|
1
|
259
|
October 4, 2023
|
|
Ligand restraints
|
|
0
|
178
|
July 3, 2023
|
|
Energy minimization works with steepest descent but not conjugate gradient
|
|
3
|
1673
|
June 22, 2023
|
|
Guest molecules leaving hydrate even w/ restraints
|
|
0
|
354
|
May 25, 2023
|
|
ERROR No such moleculetype NA
|
|
14
|
4896
|
May 12, 2023
|
|
Tutorial 2: KALP15 in DPPC EM problem
|
|
1
|
963
|
May 3, 2023
|
|
'topol' does not exist or is not accessible
|
|
1
|
1986
|
April 2, 2023
|