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Simultaneous Pulling of Multiple Protein Segments to Different Target Distances in GROMACS
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2
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17
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November 5, 2024
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Gromacs umbrella sampling error for pull force calculation
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4
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29
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October 30, 2024
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Rate and force unit conversion for pulling paramters
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1
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18
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October 2, 2024
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How to understand the output after pulling force is applied?
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11
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90
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September 20, 2024
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How to apply constant pull force at two ends of a molecule?
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2
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53
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September 10, 2024
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Pull code for a single window
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3
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17
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August 22, 2024
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Soft/Stiff Spring
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1
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33
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August 19, 2024
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Free energy calculation with fixed relative position
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2
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41
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August 12, 2024
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Question about absolute reference point/warning for pulling a protein between solvents
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0
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34
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July 14, 2024
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Another Problem with Distances Between Pull Groups
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3
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487
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July 14, 2024
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Issues with Pulling Protein Through a Pore: High Forces and Restraint Effects
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2
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81
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July 11, 2024
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COM pulling of large groups:
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1
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150
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May 6, 2024
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Steered MD doesn't produce expected force graph
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1
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148
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April 8, 2024
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Assistance Needed with Pulling a Protein Aggregate Through a Protein Pore
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1
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124
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April 1, 2024
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Setting pull_coord1_geometry = distance vs pull_coord1_geometry = direction
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0
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198
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March 27, 2024
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AWH reaction coordinate
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2
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613
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February 14, 2024
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Water flow through a nanopore
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3
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494
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February 2, 2024
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Using AWH for bilayer permeability
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15
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835
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December 21, 2023
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An error occurred in the pull code to implement the methane gas compression process under a certain
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0
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174
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December 8, 2023
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Pulling seven reaction coordinates
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17
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714
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August 22, 2023
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PMF of a small molecule across a slab that has vapor-liquid interface
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1
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366
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August 21, 2023
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Pulling with orientation and position constraints on particles
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0
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259
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August 8, 2023
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Pulling a simulated AFM tip on to lipid bilayers
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0
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277
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June 19, 2023
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How to put constraints on MARTINI beads
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0
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314
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June 19, 2023
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Pull code distance restraint
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2
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775
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June 7, 2023
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Constraining two water droplets at constant distance between their COMs using pull code
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33
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891
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May 9, 2023
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Pull_f and Pull_X graphs showing sharp peaks
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2
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281
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April 18, 2023
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How to apply pulling force in one helix of a single chain globular protein to perform SMD?
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10
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1027
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March 24, 2023
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Pull code error in Gromacs version 2019.6
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6
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2446
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November 22, 2022
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Negative force from pulling simulation
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5
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771
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November 16, 2022
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