|
Pulling simulations help
|
|
0
|
1
|
June 19, 2025
|
|
Simple Pulling script 1D 1 group
|
|
0
|
6
|
May 17, 2025
|
|
LINCS error while performing pull simulations?
|
|
17
|
72
|
March 18, 2025
|
|
Unfolding a 574 aa protein
|
|
0
|
34
|
February 3, 2025
|
|
Simultaneous Pulling of Multiple Protein Segments to Different Target Distances in GROMACS
|
|
4
|
53
|
December 2, 2024
|
|
Pull-force error
|
|
5
|
31
|
November 15, 2024
|
|
Gromacs umbrella sampling error for pull force calculation
|
|
4
|
79
|
October 30, 2024
|
|
Rate and force unit conversion for pulling paramters
|
|
1
|
86
|
October 2, 2024
|
|
How to understand the output after pulling force is applied?
|
|
11
|
275
|
September 20, 2024
|
|
How to apply constant pull force at two ends of a molecule?
|
|
2
|
119
|
September 10, 2024
|
|
Pull code for a single window
|
|
3
|
23
|
August 22, 2024
|
|
Soft/Stiff Spring
|
|
1
|
58
|
August 19, 2024
|
|
Free energy calculation with fixed relative position
|
|
2
|
65
|
August 12, 2024
|
|
Question about absolute reference point/warning for pulling a protein between solvents
|
|
0
|
75
|
July 14, 2024
|
|
Another Problem with Distances Between Pull Groups
|
|
3
|
669
|
July 14, 2024
|
|
Issues with Pulling Protein Through a Pore: High Forces and Restraint Effects
|
|
2
|
90
|
July 11, 2024
|
|
COM pulling of large groups:
|
|
1
|
311
|
May 6, 2024
|
|
Steered MD doesn't produce expected force graph
|
|
1
|
171
|
April 8, 2024
|
|
Assistance Needed with Pulling a Protein Aggregate Through a Protein Pore
|
|
1
|
167
|
April 1, 2024
|
|
Setting pull_coord1_geometry = distance vs pull_coord1_geometry = direction
|
|
0
|
227
|
March 27, 2024
|
|
AWH reaction coordinate
|
|
2
|
635
|
February 14, 2024
|
|
Water flow through a nanopore
|
|
3
|
519
|
February 2, 2024
|
|
Using AWH for bilayer permeability
|
|
15
|
1009
|
December 21, 2023
|
|
An error occurred in the pull code to implement the methane gas compression process under a certain
|
|
0
|
182
|
December 8, 2023
|
|
Pulling seven reaction coordinates
|
|
17
|
859
|
August 22, 2023
|
|
PMF of a small molecule across a slab that has vapor-liquid interface
|
|
1
|
390
|
August 21, 2023
|
|
Pulling with orientation and position constraints on particles
|
|
0
|
269
|
August 8, 2023
|
|
Pulling a simulated AFM tip on to lipid bilayers
|
|
0
|
282
|
June 19, 2023
|
|
How to put constraints on MARTINI beads
|
|
0
|
326
|
June 19, 2023
|
|
Pull code distance restraint
|
|
2
|
929
|
June 7, 2023
|