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Small questions about covalent bound ligand
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19
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1195
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June 5, 2025
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-noappend constant-pH MD
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7
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32
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June 5, 2025
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AWH multiple .xvg files analysis
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1
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16
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June 5, 2025
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Using minimum distance for umbrella sampling
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11
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61
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June 5, 2025
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GROMACS computer
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0
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13
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June 5, 2025
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Charmmgui generated parameters how to use in gromacs for box preparation
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0
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8
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June 4, 2025
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OPLS/2020 force field for GROMACS?
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3
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50
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June 4, 2025
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How to use Gromacs to determine whether the protein put in can form a complex?
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0
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10
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June 4, 2025
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Umbrella-sampling setup of molecule permeation through interface surfactant membrane
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20
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228
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June 4, 2025
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Help: Error encountered in gmx hbond hydrogen bond calculation
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2
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15
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June 4, 2025
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Should I be worried about this warning , or should I ignore with -maxwarn
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4
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429
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June 4, 2025
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GROMACS hangs on AMD GPU
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8
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57
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June 2, 2025
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Membrane Equilibrium
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3
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18
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June 2, 2025
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Molecule type 'Protein_chain_A' contains no atoms
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1
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22
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June 2, 2025
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Segmentration Fault and to small of a timestep problem from a Amber built system
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19
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538
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November 11, 2024
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Escape prime (') char in atom name for selection command
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4
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41
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May 29, 2025
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Confusion over RB and Fourier Dihedrals
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0
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8
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May 29, 2025
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Higher deviation for ligands than the backbone
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1
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19
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May 29, 2025
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Error running Periodic graphene with mpi threads
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0
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8
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May 29, 2025
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Problems installing gromacs 2025.2 on AMD 9070XT GPU with HIP
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14
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54
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May 29, 2025
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Get the Binding residues
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0
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9
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May 28, 2025
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Making a trajectory by listing frames
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1
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7
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May 28, 2025
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Rocm could not find /opt/rocm/llvm/lib/cmake/llvm/
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4
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23
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May 28, 2025
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CUDA toolkit in cryoSPARC for GROMACS
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0
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6
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May 27, 2025
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GROMACS cant detect GPU (AMD)
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7
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116
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May 27, 2025
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Gromacs can not recognize my amd gpu
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1
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32
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May 26, 2025
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Pdb2gmx: -ter option doesn't work
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0
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11
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May 26, 2025
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Can we run coarse gain simulation on newer version of Gromacs
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0
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13
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May 26, 2025
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PBC Box Failing to Expand to Input .gro File Parameters + Unwanted Position Restrained Protein
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0
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9
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May 26, 2025
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NVT Equilibration
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0
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17
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May 23, 2025
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