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Constraining terminal basepairs in DNA
|
|
3
|
21
|
July 20, 2021
|
|
Distance calculation between four different protein residues and the ligand molecule as a function o
|
|
7
|
48
|
July 20, 2021
|
|
Solvation free energy computation by g_mmpbsa module
|
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0
|
8
|
July 20, 2021
|
|
MD simulations
|
|
1
|
18
|
July 20, 2021
|
|
CGenFF problem in replicating the tutorial
|
|
1
|
22
|
July 20, 2021
|
|
How can i get the exchange probabiltiy?
|
|
5
|
66
|
July 20, 2021
|
|
The order of the clusters in the log file obtained from GROMACS clustering
|
|
1
|
12
|
July 20, 2021
|
|
Defining central atom in steered molecular dynamics
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|
2
|
30
|
July 20, 2021
|
|
Performance on Fujitsu A64FX
|
|
3
|
65
|
July 19, 2021
|
|
Testing GROMACS on Linux ARM64
|
|
2
|
28
|
July 19, 2021
|
|
nvidia-smi not recognized
|
|
1
|
13
|
July 19, 2021
|
|
Error in installing gromacs by "make" command
|
|
3
|
27
|
July 19, 2021
|
|
Updating Cuda driver version
|
|
2
|
49
|
July 19, 2021
|
|
Multidimensional AWH
|
|
3
|
42
|
July 19, 2021
|
|
Gmx current dsp file
|
|
0
|
24
|
July 19, 2021
|
|
Installation of GROMACS on MAC air having new M1 chip
|
|
2
|
18
|
July 18, 2021
|
|
Conformers -- test
|
|
0
|
13
|
July 17, 2021
|
|
Minimization in vacuum without PBC
|
|
14
|
1292
|
July 17, 2021
|
|
AWH accelerated sampling
|
|
5
|
85
|
July 17, 2021
|
|
GROMACS - gpu is not detected
|
|
8
|
106
|
July 16, 2021
|
|
Free Energy couple-intramol = yes + bonded_lambdas?
|
|
0
|
25
|
July 15, 2021
|
|
Erorrs while using gromos54a7
|
|
0
|
25
|
July 16, 2021
|
|
Non-Prebound Protein and Membrane Bonding simulation
|
|
1
|
11
|
July 16, 2021
|
|
Protein-DNA binding free energy Calculation tutorial
|
|
0
|
24
|
July 16, 2021
|
|
Ligand does not appear in ligand-protein gro file when visualized
|
|
0
|
7
|
July 16, 2021
|
|
Capping residue ACE not recognised from the rtp file
|
|
9
|
132
|
July 15, 2021
|
|
Cohesive energy density in gromacs?
|
|
0
|
18
|
July 15, 2021
|
|
Calculation of potential of single water molecule and its rotation energy
|
|
0
|
13
|
July 15, 2021
|
|
Extracellular Salt Bridges
|
|
1
|
19
|
July 14, 2021
|
|
Errors in Installation of Gromacs 2021 by Intel Compilers
|
|
0
|
48
|
April 29, 2021
|
