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Ligand moving out of the binding pocket
|
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0
|
13
|
May 30, 2023
|
|
Atomype SD not found
|
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0
|
11
|
May 30, 2023
|
|
No domain decomposition while using restraints
|
|
5
|
178
|
May 30, 2023
|
|
Missing files while following the membrane protein tutorial
|
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2
|
27
|
May 30, 2023
|
|
How do I solve the problem of matter not being in the center of the box？
|
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6
|
100
|
May 30, 2023
|
|
What is the best settings for M2P file?
|
|
1
|
163
|
May 29, 2023
|
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Double precision mdrun fails when requesting more than single precision in .xtc output
|
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9
|
54
|
May 29, 2023
|
|
How to choose box length for lipid bilayer
|
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0
|
21
|
May 28, 2023
|
|
How can i simulate metalloproteins in gromacs?
|
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0
|
24
|
May 28, 2023
|
|
Restraints of 2 different molecules in a simulation with different restraint spring constants
|
|
1
|
23
|
May 27, 2023
|
|
Assertion failed: ; Condition: realGrid_ ;Bad (null) input real-space grid
|
|
2
|
70
|
May 27, 2023
|
|
Zinc displacement and coordination
|
|
1
|
20
|
May 26, 2023
|
|
ABF error with colvars module
|
|
5
|
28
|
May 26, 2023
|
|
Error installing gromacs 2021.4
|
|
0
|
25
|
May 26, 2023
|
|
How to get the list of atoms which have minimum distance
|
|
1
|
25
|
May 26, 2023
|
|
The various operations of GROMACS
|
|
1
|
43
|
May 26, 2023
|
|
Rotacf indexing problem
|
|
1
|
23
|
May 26, 2023
|
|
Compiling GROMACS 2023 with Intel LLVM compilers
|
|
1
|
38
|
May 26, 2023
|
|
MM-GBSA and MM-PBSA for Gromacs 2020
|
|
3
|
2943
|
May 26, 2023
|
|
3 Tests Fail: MDRunIOTest
|
|
1
|
36
|
May 26, 2023
|
|
Guest molecules leaving hydrate even w/ restraints
|
|
0
|
21
|
May 25, 2023
|
|
Minimization error
|
|
7
|
57
|
May 25, 2023
|
|
Computation of Pres-XX like terms for the selection SOL
|
|
4
|
20
|
May 25, 2023
|
|
Calculation of interaction energy between small molecules
|
|
4
|
40
|
May 25, 2023
|
|
Atom CA used in that entry is not found in the input file
|
|
0
|
25
|
May 24, 2023
|
|
High RMSD value and Fluctuations
|
|
22
|
217
|
May 24, 2023
|
|
Protein ligand tutorial gone wrong? Maybe? VMD
|
|
1
|
42
|
May 24, 2023
|
|
Protein come out of the box but trjconv command didn't fix the problem
|
|
8
|
1319
|
May 24, 2023
|
|
Make check tests fail on amd rx 6650xt
|
|
14
|
148
|
May 24, 2023
|
|
Generating parameter file for a metalloid
|
|
0
|
20
|
May 24, 2023
|