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Penalty restricted dynamics in gromacs
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0
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7
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October 20, 2021
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How to know which frame of trajectory has a minimum energy in free energy landscape analysis?
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0
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11
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October 19, 2021
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creating topolgy for small organic molecule in complex with a protein with unnatural residue
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4
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31
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October 19, 2021
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Coulomb-modifier with PME (straight cutoff)
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0
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6
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October 19, 2021
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Indexing issue and grompp
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0
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19
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October 18, 2021
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Amber14sb and OPC water
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0
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22
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October 18, 2021
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Umbrella sampling box size error
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1
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29
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October 18, 2021
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High concentration salt solution
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2
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36
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October 18, 2021
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Comparison between vdW-DF and LJ potential
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0
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7
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October 18, 2021
|
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How to apply COM pull on molecules of the same type?
|
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9
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61
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October 18, 2021
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"Assertion failed" error when running the BAR command
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2
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69
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October 18, 2021
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Pull code and pull-group1-pbcatom
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8
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403
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October 18, 2021
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Calculating ion surface accessibility
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0
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6
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October 18, 2021
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Slurm Job terminates and restarts while writing *.gro files at the end of mdrun
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0
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13
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October 18, 2021
|
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Adding Phosphate Group to Serine Residue for AMBER to Simulate on GROMACS
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0
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9
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October 17, 2021
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Error when trying to generate topology with command gmx pdb2gmx -f prot.pdb -o prot_processed.gro -w
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0
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3
|
October 16, 2021
|
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EM chaning peptide coordinated even after using position restrain
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2
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21
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October 15, 2021
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GROMACS and Amber19SBff
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0
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28
|
October 15, 2021
|
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About the calculation result of translational energy and rotational energy
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0
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17
|
October 15, 2021
|
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Fatal error in running pdb2gmx command
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3
|
45
|
October 15, 2021
|
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ImportError: cannot import name 'gcd'
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0
|
11
|
October 14, 2021
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Negative dielectric constant from gmx dielectric
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0
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23
|
October 14, 2021
|
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Ensemble for viscosity calculation in Non equilibrium MD
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3
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42
|
October 14, 2021
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Merging two gro files
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0
|
31
|
October 14, 2021
|
|
Does GROMOS96 53a6 support N-methyl acetamide?
|
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1
|
15
|
October 13, 2021
|
|
Continuing from extended simulation fails to find output files
|
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3
|
297
|
October 13, 2021
|
|
Creating an amyloid fibril spanning infinitely in the z-direction using pbc
|
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7
|
75
|
October 13, 2021
|
|
Making efficient use of CPU and GPU in an old workstation using gmx 5.1.4
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5
|
47
|
October 13, 2021
|
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How to estimate H-Bond energy in gromacs
|
|
5
|
62
|
October 13, 2021
|
|
GPU acceleration on Mac M1 mini
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|
1
|
35
|
October 13, 2021
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