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NVE simulation kinetic and total energy gradually increasing
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12
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169
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December 18, 2024
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How to specify distance for calculating the msd
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4
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31
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December 18, 2024
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Drift of the system in the periodic box during simulations
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2
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21
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December 17, 2024
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No default improper dihedral types in Amber ff14sb-OL21 for DNA simulations
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1
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20
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December 17, 2024
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gmx_MMPBSA order of the molecules in the pdb file and topology file
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0
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6
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December 17, 2024
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Removing the center of mass translational velocity
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6
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2091
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December 17, 2024
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Inconsistent shifts over periodic boundaries, a problem with the ligand
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5
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28
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December 17, 2024
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Hello all please help me for gromacs installation with cuda. I m getting following error
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12
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92
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December 17, 2024
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Simulating the interaction between cellulose (polysaccharide) and proteins
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0
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5
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December 17, 2024
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No such molecule POP1 error during CG simulation minimization step
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35
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71
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December 17, 2024
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CO3-- angle modification
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26
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28
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December 17, 2024
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Compatibility between single precision and double precision
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3
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14
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December 17, 2024
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Folding simulation and box size
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0
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8
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December 17, 2024
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Optimizing GROMACS 2023.1 run for better GPU utilization
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1
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35
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December 16, 2024
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Benchmarking GROMACS 2023 using STMV - PME rank outside cutoff of domain decomposition
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1
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20
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December 16, 2024
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How to calculate hydrophobic interactions in gromacs?
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0
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6
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December 16, 2024
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Implemetation of Nose-Hoover Langevin piston pressure control in Gromacs
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1
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12
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December 16, 2024
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Regarding my protein-dna complex molecular dynamics error
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2
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10
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December 16, 2024
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Help with setting up topology for supramolecular polymers
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7
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19
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December 16, 2024
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CP2K2023.2/GROMACS2024.4 interface + Colvars behaviour
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0
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10
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December 15, 2024
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High Penalty Score in CGENFF topology
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0
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9
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December 15, 2024
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About calculation of residence time in GMX
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1
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7
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December 15, 2024
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Topology creation for an acylated amino acid in Charmm force field
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5
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63
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December 13, 2024
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On computing distances between COMs
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2
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18
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December 13, 2024
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Free Energy dummy atom segment fault
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4
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41
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December 13, 2024
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Patchy particles to prepare coarse-grain simulations
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0
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10
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December 12, 2024
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Issues with MD Run and Fe Displacement in Hemoglobin Simulation
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4
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38
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December 13, 2024
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About MTS with SD integrator
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4
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33
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December 13, 2024
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Umbrella sampling for membrane-peptide system
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3
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42
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December 12, 2024
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Gpu update giving error with protein ligand complex
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9
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1359
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December 12, 2024
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