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Install workflow with AMD GPU support (Framework 16, Ubuntu 24.04, GPU: AMD Radeon RX 7700S)
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11
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2740
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May 6, 2026
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Post MD analysis of peptide-membrane interaction
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0
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29
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May 6, 2026
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AWH simulation with cylinder pull geometry
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14
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149
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May 6, 2026
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RMSD shoots up
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18
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1798
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May 5, 2026
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Backmapping CG to AA
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0
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34
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May 3, 2026
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Is PBC correction needed before Peak force, total work, RMSD analysis and trajectory visualization?
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1
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36
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May 2, 2026
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LINCS Error in production run
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2
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129
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May 1, 2026
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"Segmentation fault", "std::bad_alloc" and "malloc(): invalid size" when running gmx hbond
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11
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1314
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April 30, 2026
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Custom Amino Acid Partial Charge Assignment
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0
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20
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April 30, 2026
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Mdrun with awh for a dimeric protein
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0
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37
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April 29, 2026
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How to extract middle cluster structure form gmx_cluster output file cluster.pdb
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0
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35
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April 29, 2026
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PBC/trajectory reconstruction problem for discontinuous multi-chain RNA fragment
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0
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19
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April 28, 2026
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Fatal error: Internal error in LAPACK diagonalization
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6
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65
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April 28, 2026
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Installing gromac in anaconda/spyder environment
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0
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22
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April 28, 2026
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One system not plateauing in NPT before SMD comparison across multiple complexes
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0
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23
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April 28, 2026
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Question Amber19SB and generation of modified residues
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0
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35
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April 26, 2026
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GROMACS SMD for TCR–pMHC: should TCR be pull group 1 or 2
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0
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34
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April 25, 2026
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Energy calculations during mdrun with multiple groups
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2
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35
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April 23, 2026
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Covalent bound PLP to SPT (membrane bound)
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0
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28
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April 22, 2026
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Unexpected lateral forces in idealised slab system of LJ particles
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1
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35
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April 22, 2026
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Using AWH for bilayer permeability
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18
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1371
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April 22, 2026
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How to use CHARMM-GUI LBS Finder & Refiner output for GROMACS sim to hypothesize binding site
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0
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23
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April 21, 2026
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Peptide-protein MD sumulation
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0
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26
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April 21, 2026
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Scaling factor for surface tension in Reduced Units
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2
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36
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April 19, 2026
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'Two replicas have identical temperatures' error during REST2 simulation in GROMACS 2025"
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1
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35
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April 15, 2026
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Changes of default `nstpcouple` and `nsttcouple` from version 2022 to 2023
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35
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2436
|
April 14, 2026
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Extreme performance loss with version 2026.1 on APUs
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10
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149
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April 13, 2026
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Would x3DNA/DSSR functionality built into Gromacs be useful?
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3
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67
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April 10, 2026
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CHARMMGUI Webserver Topologies to GROMACS
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3
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84
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April 9, 2026
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Martini AWH: Drug–polymer complex does not permeate membrane with position restraints; complex break
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0
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30
|
April 9, 2026
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