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MM/PBSA for the latest gromacs versions
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18
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430
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November 6, 2020
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Failing tests Gromacs 2021.1
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2
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44
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June 9, 2021
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Free Energy Calculation general questions and LINCS Warning
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9
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127
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June 8, 2021
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Gromacs 2021.2 with MPI on WSL
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3
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34
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June 9, 2021
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Gromacs installation patched with plumed
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4
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62
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June 8, 2021
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Trajectory analysis
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1
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37
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June 8, 2021
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Umbrella Sampling for Surface Adsorption
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0
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27
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June 7, 2021
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Efficient parallelization schme
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5
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70
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June 7, 2021
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Unknown command-line option -multi
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3
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32
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June 7, 2021
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What the funct 1 means in itp file
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1
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15
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June 7, 2021
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Memory access fault when running mdrun with the AMD GPU
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2
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27
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June 7, 2021
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How can i get the Replica exchange statistics?
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4
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31
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June 7, 2021
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Help on how to solve "atom N not found in building block 1ADE while combining tdb and rtp"
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4
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16
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June 6, 2021
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How to simulate two ligands? My setup doesnt include any polypeptide
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1
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22
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June 5, 2021
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How to create an .rtp file
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4
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62
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June 4, 2021
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Adding non-standard amino acid topologies to CHARMM36 using CHARMM-GUI
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1
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29
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June 4, 2021
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How to get trajectory frame each one nono second?
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3
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35
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June 4, 2021
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Negative information entropy in free energy calculations
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0
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16
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June 4, 2021
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"Can't find dummy mass for type CT bonded to type C8 in the virtual site database (.vsd files)"
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0
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8
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June 4, 2021
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RMSD problem
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2
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43
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June 4, 2021
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Installation problem with GROMACS 2019.4 and cuda 11.2
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1
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15
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June 3, 2021
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Rotating my System
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4
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72
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June 3, 2021
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Pulling simulation
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1
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29
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June 3, 2021
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Adding SEP and TPO to CHARMM36 ff
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2
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19
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June 3, 2021
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Issues with trjorder using TIP5P water model
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1
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22
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June 3, 2021
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Hydorder output
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1
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35
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June 3, 2021
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Running gromacs with python
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4
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99
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June 3, 2021
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Umbrella sampling simulation
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1
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19
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June 3, 2021
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Conver ASCII format covariance matrix to back binary form
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0
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6
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June 2, 2021
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Mismatch between atom numbers in index file and those reported in mdrun log file
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2
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25
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June 2, 2021
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