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Topology and force-field parameters for Rhodamine B in water
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0
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63
|
August 10, 2026
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Use of the CRYST1 values in the DSSP calculation
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8
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141
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August 10, 2026
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Terminates abruptly /crashes
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1
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58
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August 10, 2026
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C-rescale barostat and simulated annealing
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4
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115
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August 6, 2026
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Issue generating PFBS anion parameters with LigParGen
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2
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120
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August 5, 2026
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Z‑dimension of the box decreases
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3
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92
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August 5, 2026
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HEAVY_H masses in the CHARMM36m GROMACS force field
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9
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193
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August 5, 2026
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Constructing core shell nanoparticle
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0
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46
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August 4, 2026
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Extend option in gmx convert-tpr
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12
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6157
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August 3, 2026
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RTX 5070 Not Utilized
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3
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760
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August 1, 2026
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Correct protocol for generating independent replicas of a membrane-protein simulation.
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3
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117
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July 30, 2026
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Advice on CGenFF penalty scores for a large, DFT-optimised molecule
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4
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134
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July 29, 2026
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Preprocessing error with CGenFF 5.0 topology: unsupported multiple CHARMM type-9 dihedral parameters
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0
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31
|
July 29, 2026
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How create Charmm36 topology parameters for glycans
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2
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80
|
July 28, 2026
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Parametrization of pyroglutamate
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2
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74
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July 28, 2026
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AWH convergence for a charged ligand permeating a bilayer
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5
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108
|
July 28, 2026
|
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Trans to cis confirmation at NVT step
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0
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33
|
July 28, 2026
|
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Regressiontests/complex tests fail with intelmpi GHROMACS build
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1
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57
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July 27, 2026
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How to simulate EDLC (Electrochemical Double Layer)?
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1
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175
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July 24, 2026
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Simulation of a dizinc metallo protein
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6
|
612
|
July 24, 2026
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When is trajectory preprocessing (whole/cluster/nojump/center) actually required for analysis?
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2
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114
|
July 24, 2026
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Umbrella sampling simulation pulling towards periodic box using martini 3 forcefield
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3
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76
|
July 23, 2026
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X2top not generating listed interactions correctly
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1
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65
|
July 23, 2026
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Simulating an Infinite polymer across boundaries
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1
|
64
|
July 23, 2026
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"No default Per. Imp. Dih. types" when using amber14sb_parmbsc1_cufix force field
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0
|
36
|
July 21, 2026
|
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How to remove duplicate frames
|
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2
|
55
|
July 20, 2026
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Gmx order for unsaturated AII-Atom lipid chains
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3
|
431
|
July 18, 2026
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DNA and protein grouping for RMSD calculations
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0
|
46
|
July 17, 2026
|
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Issue with ligand preparation in CGENFF
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0
|
46
|
July 15, 2026
|
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Multiple gmx processes on GPU(s) ran too slowly
|
|
10
|
242
|
July 13, 2026
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