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How can I remove a specific interaction?
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3
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31
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March 2, 2026
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Amber19SB and Amber14SB in old versions of Gromacs
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13
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188
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February 27, 2026
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How to calculate fluctuation dissipation constant (h)
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0
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14
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February 26, 2026
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Advice on Monitoring Passive Membrane Permeation via Unbiased MD
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2
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54
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February 25, 2026
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Ion Channel PMF calculation analysis
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0
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13
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February 24, 2026
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Gromacs-CP2k energy minimization
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0
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26
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February 24, 2026
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Define ATP+mg in Amber forcefield
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0
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25
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February 23, 2026
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Tabulated non-bonded potentials
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12
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1124
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February 23, 2026
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Alchemical Free Energy calculation (dH/d\lambda) of a tabulated potential
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5
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122
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February 23, 2026
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GROMACS pdb2gmx Warning: Missing Atoms (H and O) in AlphaFold3-Derived TCR–pMHC Structure
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0
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9
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February 23, 2026
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Using tpic widom insertion in gromacs
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0
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15
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February 21, 2026
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CMake Error (missing OpenMP_CUDA_FLAGS) on Windows when building with CUDA
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10
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1197
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February 21, 2026
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Steered MD Simulation error
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19
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120
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February 19, 2026
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Discrete "Coulp.-recip" values for different conformations of the same system
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10
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45
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February 18, 2026
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Issue with Coarse-Grained Lipid Bilayer + Protein Simulation (Missing Frames After ~36 µs)
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0
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19
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February 18, 2026
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Confusion about -DNORMANG in define field of MDP file, where is this flag defined?
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2
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33
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February 18, 2026
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Equilibration not work
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0
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21
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February 17, 2026
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CGenFF ERROR - attype warning: unknown sulfur type (SD) not supported; skipped molecule
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2
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282
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February 16, 2026
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AWH vs Metadynamics
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1
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61
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February 16, 2026
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How to decide the production time in the free energy calculations?
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0
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13
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February 16, 2026
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Issue with orienting two monomers during dimer insertion in GoMARTINI membrane system
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0
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15
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February 13, 2026
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MD simulation of multichain dimer
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2
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37
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February 13, 2026
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Problem in using make_ndx to define index
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5
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42
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February 13, 2026
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Discussion on sugars as an osmolyte
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0
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14
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February 12, 2026
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Performance regression in 2025.4: suboptimal CUDA NBNxM kernel selection vs 2024.2
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7
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78
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February 12, 2026
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Is -table option in mdrun still enable?
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3
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28
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February 12, 2026
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Gromacs2026.0, Large number of warnings when building with cray programing environments (CPE25.02)
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1
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33
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February 11, 2026
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Pull code (umbrella, distance): Fatal error "Pull reference distance … needs to be non-negative"
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1
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35
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February 11, 2026
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MDRun Losing Atoms
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7
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55
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February 10, 2026
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SMD simulation - protein pulling and resulting rotation
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2
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43
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February 10, 2026
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