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AWH convergence for a charged ligand permeating a bilayer
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5
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97
|
July 28, 2026
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Trans to cis confirmation at NVT step
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0
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33
|
July 28, 2026
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Regressiontests/complex tests fail with intelmpi GHROMACS build
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1
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57
|
July 27, 2026
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How to simulate EDLC (Electrochemical Double Layer)?
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1
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171
|
July 24, 2026
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Simulation of a dizinc metallo protein
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6
|
602
|
July 24, 2026
|
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When is trajectory preprocessing (whole/cluster/nojump/center) actually required for analysis?
|
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2
|
102
|
July 24, 2026
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Umbrella sampling simulation pulling towards periodic box using martini 3 forcefield
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3
|
64
|
July 23, 2026
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X2top not generating listed interactions correctly
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1
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52
|
July 23, 2026
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Simulating an Infinite polymer across boundaries
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1
|
56
|
July 23, 2026
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"No default Per. Imp. Dih. types" when using amber14sb_parmbsc1_cufix force field
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0
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34
|
July 21, 2026
|
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How to remove duplicate frames
|
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2
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47
|
July 20, 2026
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Gmx order for unsaturated AII-Atom lipid chains
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3
|
422
|
July 18, 2026
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DNA and protein grouping for RMSD calculations
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0
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42
|
July 17, 2026
|
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Issue with ligand preparation in CGENFF
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0
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43
|
July 15, 2026
|
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Multiple gmx processes on GPU(s) ran too slowly
|
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10
|
214
|
July 13, 2026
|
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Simulation of whole yeast ribosome to study single residue substitution in core RP
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0
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26
|
July 13, 2026
|
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RMSD for Protein-Ligand complex
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2
|
994
|
July 13, 2026
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Trajectory preprocessing in peptide self-assembly simulations
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0
|
39
|
July 12, 2026
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gmx_MMPBSA for big molecule
|
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1
|
71
|
July 10, 2026
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PBC correction for ionisable lipid–lipid bilayer system (GROMACS 2025.4)
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0
|
47
|
July 10, 2026
|
|
GROMACS Courtesy
|
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0
|
45
|
July 10, 2026
|
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TIP4P/Ice .itp File
|
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0
|
34
|
July 9, 2026
|
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gmx_MMPBSA error in Steered Molecular dynamics simulation trajectory
|
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1
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62
|
July 9, 2026
|
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G_mmpbsa for the gromacs 2025 versions
|
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1
|
53
|
July 9, 2026
|
|
Atoms not completely removed by convert-tpr
|
|
3
|
81
|
July 8, 2026
|
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PBC wrapping for Protein-Ligand-Surface system
|
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0
|
31
|
July 7, 2026
|
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Use of refcoordscaling in CHARMM and MARTINI
|
|
0
|
27
|
July 7, 2026
|
|
Workstation options
|
|
2
|
137
|
July 7, 2026
|
|
Can CGenFF-generated partial charges differ significantly from QM-derived CHELPG (ESP) charges?
|
|
2
|
102
|
July 5, 2026
|
|
RMSD analysis of the Protein-Ligand simulation
|
|
0
|
50
|
July 5, 2026
|