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Calculating the free energy of binding using AWH approach
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8
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144
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May 28, 2026
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Box changing shape after equilibration
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8
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123
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May 26, 2026
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GROMACS 2026.3-dev on gfx1201 (RX 9070 XT) - Device detection failure
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5
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101
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May 26, 2026
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DCLE diffuse into Bulk solution from membrane after 1.8 ns equilbration in HMMM (Charmm-Gui)
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0
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31
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May 26, 2026
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Possible inconsistency when mixing GROMACS 2023.1 and 2025.x for umbrella sampling workflows
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2
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53
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May 23, 2026
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For those who wanna build on Windows with Visual Studio 2026
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1
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59
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May 20, 2026
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Simulation box size?
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7
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108
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May 19, 2026
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Water surface tension
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12
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190
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May 19, 2026
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Gromacs installation on Fugaku ARM (A64FX) Node with Fujitsu MPI
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8
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58
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May 19, 2026
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Excluded distance larger than cutoff in ligand with virtual site
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22
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651
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May 19, 2026
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COM motion removal during NVT simulation with electric field
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5
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85
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May 19, 2026
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Centering a molecule that crosses periodic boundaries — single-atom trick
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1
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53
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May 18, 2026
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How to solve inconsistent shifts over periodic boundaries in protein-dna run in minimization step?
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11
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3058
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May 17, 2026
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Divalent ion parameterization in GROMACS
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1
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47
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May 13, 2026
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Segmentation fault without further information
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3
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54
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May 13, 2026
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Colvars: Error: keyword "customfunction" is not supported
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3
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185
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May 12, 2026
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Details of viscosity estimation (gmx energy -vis)
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6
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1289
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May 11, 2026
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Mindist usage on multichain systems
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0
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19
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May 11, 2026
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Gmx 2025.4 in Ubuntu 26.04
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3
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87
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May 8, 2026
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Sidechain S square for md data using rotacf
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0
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22
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May 8, 2026
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Order Parmeter S^2 using rotacf
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3
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715
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May 8, 2026
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Duplicates of rows of angles and dihedrals for groups containing Cl
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1
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29
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May 8, 2026
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Error due to line in input file longer than 4095 characters
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9
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1083
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May 7, 2026
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Make not working during gromacs installation
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3
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325
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May 7, 2026
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Install workflow with AMD GPU support (Framework 16, Ubuntu 24.04, GPU: AMD Radeon RX 7700S)
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11
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3107
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May 6, 2026
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Post MD analysis of peptide-membrane interaction
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0
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29
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May 6, 2026
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AWH simulation with cylinder pull geometry
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14
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160
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May 6, 2026
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RMSD shoots up
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18
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1806
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May 5, 2026
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Backmapping CG to AA
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0
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38
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May 3, 2026
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Is PBC correction needed before Peak force, total work, RMSD analysis and trajectory visualization?
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1
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37
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May 2, 2026
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