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Query:Reagrding using the multiple nodes's GPU or CPU to run MD production step in gromacs
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4
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47
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November 20, 2025
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How to determine the number of water molecules in a box? gmx insert-molecules or gmx solvate?
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8
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82
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November 20, 2025
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GPU-binding with CRAY-MPICH causes crash?
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3
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43
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November 19, 2025
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Best practice for using newer AMBER force fields (ff19SB) in GROMACS?
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2
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112
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November 19, 2025
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UMBRELLA SAMPILNG pull reference
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1
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14
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November 19, 2025
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The potential energy becomes positive after assigning partial charges
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4
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34
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November 18, 2025
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What happened to mmCif file intake?
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1
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23
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November 18, 2025
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Error at grompp level as the box size is increased?
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3
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51
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November 18, 2025
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Not enough memory when running genconf for a membrane box system
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2
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21
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November 17, 2025
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Position restraints causing mdrun to stall on step 0
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3
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42
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November 17, 2025
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Problems creating a covalent bond between a protein and a ligand in GROMACS
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1
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36
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November 15, 2025
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Error Query Regarding pdb2gmx Generating TOP Files Containing DNA Fragments
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1
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27
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November 15, 2025
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Create .xtc file with rectangular unit cell?
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7
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45
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November 14, 2025
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Confusion about -DNORMANG in define field of MDP file, where is this flag defined?
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1
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18
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November 14, 2025
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Negative interfacial tension in water-oil system
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3
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29
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November 14, 2025
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GROMACS can't find files that are in the working directory
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3
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41
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November 14, 2025
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Viscosity and nstenergy
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3
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32
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November 13, 2025
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CUDA error #218
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3
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149
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November 13, 2025
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Configuring gromacs to use mpirun
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2
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45
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November 13, 2025
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GPU support: disabled! Any simple solution?
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15
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87
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November 13, 2025
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Simulate the freezing of saline under an external electric field
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12
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79
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November 13, 2025
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Segfault with ntmpi >2 with 2 GPUs
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6
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26
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November 12, 2025
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Gromacs 2025.3 installation, make check regression tests /complex failed
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5
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72
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November 12, 2025
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PBC changing drastically vertical in replicas of membrane protein with plumed
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6
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40
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November 12, 2025
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Energy minimization stops abruptly without force convergence and segmentation fault
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8
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63
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November 11, 2025
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One control to constrain a molecule type
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1
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27
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November 11, 2025
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Switching back and forth gromacs versions or having multiple runs in different gromacs verisons
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1
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39
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November 11, 2025
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Pdb2gmx not recognizing water block
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1
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31
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November 11, 2025
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Production MD stop in 23829100 step
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3
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34
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November 11, 2025
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What is the currently best OS for GROMACS?
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6
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98
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November 11, 2025
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