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COM motion removal during NVT simulation with electric field
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5
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85
|
May 19, 2026
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Centering a molecule that crosses periodic boundaries — single-atom trick
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1
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51
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May 18, 2026
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How to solve inconsistent shifts over periodic boundaries in protein-dna run in minimization step?
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11
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3055
|
May 17, 2026
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Divalent ion parameterization in GROMACS
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1
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47
|
May 13, 2026
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Segmentation fault without further information
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3
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53
|
May 13, 2026
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Colvars: Error: keyword "customfunction" is not supported
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3
|
185
|
May 12, 2026
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Details of viscosity estimation (gmx energy -vis)
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6
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1286
|
May 11, 2026
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Mindist usage on multichain systems
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0
|
19
|
May 11, 2026
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Gmx 2025.4 in Ubuntu 26.04
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3
|
85
|
May 8, 2026
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Sidechain S square for md data using rotacf
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0
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21
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May 8, 2026
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Order Parmeter S^2 using rotacf
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3
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714
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May 8, 2026
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Duplicates of rows of angles and dihedrals for groups containing Cl
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1
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29
|
May 8, 2026
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Error due to line in input file longer than 4095 characters
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9
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1083
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May 7, 2026
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Make not working during gromacs installation
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3
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325
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May 7, 2026
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Install workflow with AMD GPU support (Framework 16, Ubuntu 24.04, GPU: AMD Radeon RX 7700S)
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11
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2932
|
May 6, 2026
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Post MD analysis of peptide-membrane interaction
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0
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29
|
May 6, 2026
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AWH simulation with cylinder pull geometry
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14
|
157
|
May 6, 2026
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RMSD shoots up
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18
|
1805
|
May 5, 2026
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Backmapping CG to AA
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0
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37
|
May 3, 2026
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Is PBC correction needed before Peak force, total work, RMSD analysis and trajectory visualization?
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1
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37
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May 2, 2026
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LINCS Error in production run
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2
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130
|
May 1, 2026
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"Segmentation fault", "std::bad_alloc" and "malloc(): invalid size" when running gmx hbond
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11
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1334
|
April 30, 2026
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Custom Amino Acid Partial Charge Assignment
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0
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20
|
April 30, 2026
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Mdrun with awh for a dimeric protein
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0
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39
|
April 29, 2026
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How to extract middle cluster structure form gmx_cluster output file cluster.pdb
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0
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38
|
April 29, 2026
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PBC/trajectory reconstruction problem for discontinuous multi-chain RNA fragment
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0
|
19
|
April 28, 2026
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Fatal error: Internal error in LAPACK diagonalization
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6
|
68
|
April 28, 2026
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Installing gromac in anaconda/spyder environment
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0
|
22
|
April 28, 2026
|
|
One system not plateauing in NPT before SMD comparison across multiple complexes
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0
|
25
|
April 28, 2026
|
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Question Amber19SB and generation of modified residues
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|
0
|
39
|
April 26, 2026
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