|
New atomipy online molecular builder for inorganic/geochemical based systems
|
|
0
|
12
|
April 26, 2026
|
|
Covalent bound PLP to SPT (membrane bound)
|
|
0
|
16
|
April 22, 2026
|
|
Obtaining parameters for ligands in a nanoparticle assembly
|
|
0
|
31
|
April 5, 2026
|
|
Simulation of polypropylene huntite melt!
|
|
0
|
7
|
April 1, 2026
|
|
PEG2000 collapsing into bilayer core in atomistic simulation (GROMOS 53A6)
|
|
0
|
20
|
March 19, 2026
|
|
Amber FF parameters for metal binding centres
|
|
4
|
1327
|
March 17, 2026
|
|
Newest CHARMM36 port for GROMACS
|
|
39
|
24425
|
March 5, 2026
|
|
Amber19SB and Amber14SB in old versions of Gromacs
|
|
13
|
265
|
February 27, 2026
|
|
Define ATP+mg in Amber forcefield
|
|
0
|
31
|
February 23, 2026
|
|
CGenFF ERROR - attype warning: unknown sulfur type (SD) not supported; skipped molecule
|
|
2
|
293
|
February 16, 2026
|
|
Amber99sb-ildn ff with Hydroxyproline
|
|
1
|
46
|
February 10, 2026
|
|
How to build Ligand topology
|
|
2
|
103
|
February 4, 2026
|
|
Your Review on AMBER19sb MD in GROMACS2026
|
|
1
|
134
|
February 4, 2026
|
|
How to add hydrogen atoms to the complex with correct coordinates?
|
|
2
|
31
|
January 23, 2026
|
|
Tabulated nonbonded potentials in GROMACS 2026
|
|
1
|
55
|
January 21, 2026
|
|
Charge precision in topology files: parsing behaviour and validation tolerance
|
|
5
|
64
|
January 21, 2026
|
|
Gromacs .hdb format RU5 case study
|
|
3
|
45
|
January 14, 2026
|
|
Conducting MD simulation on a zinc metalloprotein with 4 zinc ions
|
|
0
|
50
|
January 7, 2026
|
|
Is it possible to add other form of lennard jones potential form (such as LJ9-3, LJ6-3) in gromacs?
|
|
3
|
65
|
January 7, 2026
|
|
Does GROMACS distinguish Rp/Sp chiral phosphate modifications at O1P vs O2P in DNA?
|
|
0
|
14
|
January 5, 2026
|
|
Best practice for using newer AMBER force fields (ff19SB) in GROMACS?
|
|
3
|
638
|
December 17, 2025
|
|
Adding external gpu force to gromacs result in energy conservation problem
|
|
8
|
116
|
December 10, 2025
|
|
How to add terminal caps in AMBER with GROMACS
|
|
1
|
169
|
December 3, 2025
|
|
INSANE not compatible with martini3 GM3?
|
|
1
|
100
|
December 1, 2025
|
|
Simulating a Reverse Transcriptase complex with RNA, DNA
|
|
1
|
45
|
December 1, 2025
|
|
Query regarding making all .mdp files for ionization, equllibration, energy minimization
|
|
2
|
47
|
November 25, 2025
|
|
Calculation of Coulomb 1-4 energies and Coulomb SR energies
|
|
5
|
122
|
November 24, 2025
|
|
Adding missing dihedral interactions to a Force Field
|
|
1
|
63
|
October 31, 2025
|
|
How to setup protein-ligand simulation using CHARMM-GUI for ligand preparation
|
|
9
|
570
|
October 26, 2025
|
|
A Custom Water Force Field Implementation
|
|
0
|
48
|
October 17, 2025
|