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Order Parmeter S^2 using rotacf
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3
|
715
|
May 8, 2026
|
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Duplicates of rows of angles and dihedrals for groups containing Cl
|
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1
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29
|
May 8, 2026
|
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Error due to line in input file longer than 4095 characters
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9
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1088
|
May 7, 2026
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Make not working during gromacs installation
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3
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327
|
May 7, 2026
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Install workflow with AMD GPU support (Framework 16, Ubuntu 24.04, GPU: AMD Radeon RX 7700S)
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11
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3139
|
May 6, 2026
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Post MD analysis of peptide-membrane interaction
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0
|
29
|
May 6, 2026
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AWH simulation with cylinder pull geometry
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14
|
160
|
May 6, 2026
|
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RMSD shoots up
|
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18
|
1809
|
May 5, 2026
|
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Backmapping CG to AA
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0
|
38
|
May 3, 2026
|
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Is PBC correction needed before Peak force, total work, RMSD analysis and trajectory visualization?
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1
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41
|
May 2, 2026
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LINCS Error in production run
|
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2
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136
|
May 1, 2026
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"Segmentation fault", "std::bad_alloc" and "malloc(): invalid size" when running gmx hbond
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11
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1339
|
April 30, 2026
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Custom Amino Acid Partial Charge Assignment
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0
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20
|
April 30, 2026
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Mdrun with awh for a dimeric protein
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0
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39
|
April 29, 2026
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How to extract middle cluster structure form gmx_cluster output file cluster.pdb
|
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0
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40
|
April 29, 2026
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PBC/trajectory reconstruction problem for discontinuous multi-chain RNA fragment
|
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0
|
20
|
April 28, 2026
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Fatal error: Internal error in LAPACK diagonalization
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6
|
68
|
April 28, 2026
|
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Installing gromac in anaconda/spyder environment
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0
|
24
|
April 28, 2026
|
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One system not plateauing in NPT before SMD comparison across multiple complexes
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0
|
25
|
April 28, 2026
|
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Question Amber19SB and generation of modified residues
|
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0
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42
|
April 26, 2026
|
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GROMACS SMD for TCR–pMHC: should TCR be pull group 1 or 2
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0
|
35
|
April 25, 2026
|
|
Energy calculations during mdrun with multiple groups
|
|
2
|
38
|
April 23, 2026
|
|
Covalent bound PLP to SPT (membrane bound)
|
|
0
|
38
|
April 22, 2026
|
|
Unexpected lateral forces in idealised slab system of LJ particles
|
|
1
|
37
|
April 22, 2026
|
|
Using AWH for bilayer permeability
|
|
18
|
1388
|
April 22, 2026
|
|
How to use CHARMM-GUI LBS Finder & Refiner output for GROMACS sim to hypothesize binding site
|
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0
|
25
|
April 21, 2026
|
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Peptide-protein MD sumulation
|
|
0
|
30
|
April 21, 2026
|
|
Scaling factor for surface tension in Reduced Units
|
|
2
|
37
|
April 19, 2026
|
|
'Two replicas have identical temperatures' error during REST2 simulation in GROMACS 2025"
|
|
1
|
42
|
April 15, 2026
|
|
Changes of default `nstpcouple` and `nsttcouple` from version 2022 to 2023
|
|
35
|
2454
|
April 14, 2026
|