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PBC Box Failing to Expand to Input .gro File Parameters + Unwanted Position Restrained Protein
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2
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57
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July 30, 2026
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Questions about inter domain/chain distance restraint
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0
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23
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June 17, 2026
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Calculating the free energy of binding using AWH approach
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8
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170
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May 28, 2026
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Flat-bottom restraints on specific atoms
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3
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63
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March 10, 2026
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MPI error when using ensemble-averaged distance restraints and set GMX_DISRE_ENSEMBLE_SIZE
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10
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118
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January 27, 2026
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2019 Gromacs boresch restraints not working
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6
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161
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September 24, 2025
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Flat-bottom position restraints on water molecules
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5
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144
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July 7, 2025
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Imposing restraints between protein and ligand
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24
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2323
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June 27, 2025
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Keeping Polymer Wrapped Around Nanodisc Using Flat-Bottom Restraint
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0
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52
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May 21, 2025
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Flat bottom potential at hydrophobic-water interface
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1
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84
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March 26, 2025
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How to put distance restraints into topology file
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25
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2140
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January 16, 2025
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Restraints free energy
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1
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216
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September 21, 2024
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Position Restraints on specific residues of a multimer
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2
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151
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August 22, 2024
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Position restraints queries
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3
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349
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August 22, 2024
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Removing positional restraints from .itp to stop protein unfolding during sMD
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0
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53
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July 18, 2024
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Why NVT step`s .tpr file is not generated in Steered molecular dynamics system?
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2
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92
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June 20, 2024
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Flat bottomed position restraints not working as intended
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4
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682
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June 18, 2024
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Water molecules for ion coordination in simulation
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0
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194
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April 23, 2024
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Position restraints and barostat in alchemical free energy double-system/single-box setup
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2
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474
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January 23, 2024
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How to restrain to some specified waters for OPC model
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0
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271
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December 11, 2023
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Helix unfolding despite position restraints
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0
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221
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November 7, 2023
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In Restraining the Ligand ligand option is not there
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8
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421
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November 1, 2023
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Inverted Flat-bottomed position restraint
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7
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1472
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September 7, 2023
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Flat-bottomed position restraints
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0
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411
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September 6, 2023
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Relaxing a harmonic restraint using restraint-lambda
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0
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374
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August 22, 2023
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Scaling position restraints with restraint-lambdas
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9
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1247
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July 25, 2023
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Flat Bottom Position Restraints Insufficient information on Manual
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0
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522
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June 26, 2023
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Flat Bottom Position Restraints for membrane pore
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0
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467
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June 18, 2023
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Restraints of 2 different molecules in a simulation with different restraint spring constants
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1
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299
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May 27, 2023
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Restraining two ZN position during minimization, equilibration and MD run
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3
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895
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February 20, 2023
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