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PBC Box Failing to Expand to Input .gro File Parameters + Unwanted Position Restrained Protein
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0
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9
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May 26, 2025
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Keeping Polymer Wrapped Around Nanodisc Using Flat-Bottom Restraint
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0
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6
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May 21, 2025
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Flat bottom potential at hydrophobic-water interface
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1
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16
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March 26, 2025
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How to put distance restraints into topology file
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25
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1042
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January 16, 2025
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Imposing restraints between protein and ligand
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22
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1467
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January 15, 2025
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Restraints free energy
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1
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105
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September 21, 2024
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Position Restraints on specific residues of a multimer
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2
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74
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August 22, 2024
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Position restraints queries
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3
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117
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August 22, 2024
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Removing positional restraints from .itp to stop protein unfolding during sMD
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0
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26
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July 18, 2024
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Why NVT step`s .tpr file is not generated in Steered molecular dynamics system?
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2
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46
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June 20, 2024
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Flat bottomed position restraints not working as intended
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4
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558
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June 18, 2024
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Water molecules for ion coordination in simulation
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0
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148
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April 23, 2024
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Position restraints and barostat in alchemical free energy double-system/single-box setup
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2
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404
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January 23, 2024
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How to restrain to some specified waters for OPC model
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0
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237
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December 11, 2023
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Helix unfolding despite position restraints
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0
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202
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November 7, 2023
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In Restraining the Ligand ligand option is not there
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8
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285
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November 1, 2023
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Inverted Flat-bottomed position restraint
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7
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1317
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September 7, 2023
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Flat-bottomed position restraints
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0
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383
|
September 6, 2023
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Relaxing a harmonic restraint using restraint-lambda
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0
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341
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August 22, 2023
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Scaling position restraints with restraint-lambdas
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9
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1044
|
July 25, 2023
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Flat Bottom Position Restraints Insufficient information on Manual
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0
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474
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June 26, 2023
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Flat Bottom Position Restraints for membrane pore
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0
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409
|
June 18, 2023
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Restraints of 2 different molecules in a simulation with different restraint spring constants
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1
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270
|
May 27, 2023
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Restraining two ZN position during minimization, equilibration and MD run
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3
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742
|
February 20, 2023
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Is it possible to plot the flat bottom position restrain after an NVT run in gromacs?
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0
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307
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February 16, 2023
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How can I keep Cu fixed in protein during the MD simulation?
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7
|
1124
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January 24, 2023
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Restrain initial structure during equilibration
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2
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327
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January 9, 2023
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Repulsive potential between two groups
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3
|
382
|
December 21, 2022
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CgenFF parameters showing high penalty scores
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12
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1459
|
December 8, 2022
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Domain decomposition with position and angle restraints
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3
|
425
|
June 3, 2022
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