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How to put distance restraints into topology file
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25
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550
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January 16, 2025
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Imposing restraints between protein and ligand
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22
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1035
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January 15, 2025
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Restraints free energy
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1
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67
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September 21, 2024
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Position Restraints on specific residues of a multimer
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2
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44
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August 22, 2024
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Position restraints queries
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3
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63
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August 22, 2024
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Removing positional restraints from .itp to stop protein unfolding during sMD
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0
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26
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July 18, 2024
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Why NVT step`s .tpr file is not generated in Steered molecular dynamics system?
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2
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41
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June 20, 2024
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Flat bottomed position restraints not working as intended
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4
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509
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June 18, 2024
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Water molecules for ion coordination in simulation
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0
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133
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April 23, 2024
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Position restraints and barostat in alchemical free energy double-system/single-box setup
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2
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382
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January 23, 2024
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How to restrain to some specified waters for OPC model
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0
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232
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December 11, 2023
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Helix unfolding despite position restraints
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0
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201
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November 7, 2023
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In Restraining the Ligand ligand option is not there
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8
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278
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November 1, 2023
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Inverted Flat-bottomed position restraint
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7
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1269
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September 7, 2023
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Flat-bottomed position restraints
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0
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367
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September 6, 2023
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Relaxing a harmonic restraint using restraint-lambda
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0
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331
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August 22, 2023
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Scaling position restraints with restraint-lambdas
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9
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1011
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July 25, 2023
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Flat Bottom Position Restraints Insufficient information on Manual
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0
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460
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June 26, 2023
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Flat Bottom Position Restraints for membrane pore
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0
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398
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June 18, 2023
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Restraints of 2 different molecules in a simulation with different restraint spring constants
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1
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255
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May 27, 2023
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Restraining two ZN position during minimization, equilibration and MD run
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3
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682
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February 20, 2023
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Is it possible to plot the flat bottom position restrain after an NVT run in gromacs?
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0
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307
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February 16, 2023
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How can I keep Cu fixed in protein during the MD simulation?
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7
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1068
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January 24, 2023
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Restrain initial structure during equilibration
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2
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310
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January 9, 2023
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Repulsive potential between two groups
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3
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375
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December 21, 2022
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CgenFF parameters showing high penalty scores
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12
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1250
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December 8, 2022
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Domain decomposition with position and angle restraints
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3
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416
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June 3, 2022
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Gromacs not reading POSRES even though it is pointed to in topology
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6
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1344
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June 2, 2022
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Gromacs freeze proplems
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2
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474
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April 20, 2022
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Trouble to apply distance restraints
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2
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1393
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April 4, 2022
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