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Flat-bottom position restraints on water molecules
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5
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27
|
July 7, 2025
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Imposing restraints between protein and ligand
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24
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1518
|
June 27, 2025
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PBC Box Failing to Expand to Input .gro File Parameters + Unwanted Position Restrained Protein
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0
|
10
|
May 26, 2025
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Keeping Polymer Wrapped Around Nanodisc Using Flat-Bottom Restraint
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0
|
6
|
May 21, 2025
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Flat bottom potential at hydrophobic-water interface
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1
|
18
|
March 26, 2025
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How to put distance restraints into topology file
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25
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1096
|
January 16, 2025
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Restraints free energy
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1
|
113
|
September 21, 2024
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Position Restraints on specific residues of a multimer
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2
|
75
|
August 22, 2024
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Position restraints queries
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3
|
128
|
August 22, 2024
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Removing positional restraints from .itp to stop protein unfolding during sMD
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0
|
26
|
July 18, 2024
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Why NVT step`s .tpr file is not generated in Steered molecular dynamics system?
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2
|
46
|
June 20, 2024
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Flat bottomed position restraints not working as intended
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4
|
559
|
June 18, 2024
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Water molecules for ion coordination in simulation
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0
|
150
|
April 23, 2024
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Position restraints and barostat in alchemical free energy double-system/single-box setup
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2
|
404
|
January 23, 2024
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How to restrain to some specified waters for OPC model
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0
|
237
|
December 11, 2023
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Helix unfolding despite position restraints
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0
|
202
|
November 7, 2023
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In Restraining the Ligand ligand option is not there
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8
|
285
|
November 1, 2023
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Inverted Flat-bottomed position restraint
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7
|
1322
|
September 7, 2023
|
|
Flat-bottomed position restraints
|
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0
|
385
|
September 6, 2023
|
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Relaxing a harmonic restraint using restraint-lambda
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0
|
342
|
August 22, 2023
|
|
Scaling position restraints with restraint-lambdas
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|
9
|
1050
|
July 25, 2023
|
|
Flat Bottom Position Restraints Insufficient information on Manual
|
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0
|
478
|
June 26, 2023
|
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Flat Bottom Position Restraints for membrane pore
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0
|
416
|
June 18, 2023
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Restraints of 2 different molecules in a simulation with different restraint spring constants
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|
1
|
272
|
May 27, 2023
|
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Restraining two ZN position during minimization, equilibration and MD run
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3
|
750
|
February 20, 2023
|
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Is it possible to plot the flat bottom position restrain after an NVT run in gromacs?
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0
|
307
|
February 16, 2023
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How can I keep Cu fixed in protein during the MD simulation?
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7
|
1139
|
January 24, 2023
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Restrain initial structure during equilibration
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2
|
329
|
January 9, 2023
|
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Repulsive potential between two groups
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|
3
|
383
|
December 21, 2022
|
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CgenFF parameters showing high penalty scores
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|
12
|
1485
|
December 8, 2022
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