|
PBC Box Failing to Expand to Input .gro File Parameters + Unwanted Position Restrained Protein
|
|
0
|
9
|
May 26, 2025
|
|
Keeping Polymer Wrapped Around Nanodisc Using Flat-Bottom Restraint
|
|
0
|
5
|
May 21, 2025
|
|
Flat bottom potential at hydrophobic-water interface
|
|
1
|
14
|
March 26, 2025
|
|
How to put distance restraints into topology file
|
|
25
|
990
|
January 16, 2025
|
|
Imposing restraints between protein and ligand
|
|
22
|
1430
|
January 15, 2025
|
|
Restraints free energy
|
|
1
|
98
|
September 21, 2024
|
|
Position Restraints on specific residues of a multimer
|
|
2
|
72
|
August 22, 2024
|
|
Position restraints queries
|
|
3
|
109
|
August 22, 2024
|
|
Removing positional restraints from .itp to stop protein unfolding during sMD
|
|
0
|
26
|
July 18, 2024
|
|
Why NVT step`s .tpr file is not generated in Steered molecular dynamics system?
|
|
2
|
46
|
June 20, 2024
|
|
Flat bottomed position restraints not working as intended
|
|
4
|
552
|
June 18, 2024
|
|
Water molecules for ion coordination in simulation
|
|
0
|
147
|
April 23, 2024
|
|
Position restraints and barostat in alchemical free energy double-system/single-box setup
|
|
2
|
403
|
January 23, 2024
|
|
How to restrain to some specified waters for OPC model
|
|
0
|
237
|
December 11, 2023
|
|
Helix unfolding despite position restraints
|
|
0
|
202
|
November 7, 2023
|
|
In Restraining the Ligand ligand option is not there
|
|
8
|
285
|
November 1, 2023
|
|
Inverted Flat-bottomed position restraint
|
|
7
|
1311
|
September 7, 2023
|
|
Flat-bottomed position restraints
|
|
0
|
383
|
September 6, 2023
|
|
Relaxing a harmonic restraint using restraint-lambda
|
|
0
|
340
|
August 22, 2023
|
|
Scaling position restraints with restraint-lambdas
|
|
9
|
1040
|
July 25, 2023
|
|
Flat Bottom Position Restraints Insufficient information on Manual
|
|
0
|
471
|
June 26, 2023
|
|
Flat Bottom Position Restraints for membrane pore
|
|
0
|
404
|
June 18, 2023
|
|
Restraints of 2 different molecules in a simulation with different restraint spring constants
|
|
1
|
269
|
May 27, 2023
|
|
Restraining two ZN position during minimization, equilibration and MD run
|
|
3
|
735
|
February 20, 2023
|
|
Is it possible to plot the flat bottom position restrain after an NVT run in gromacs?
|
|
0
|
307
|
February 16, 2023
|
|
How can I keep Cu fixed in protein during the MD simulation?
|
|
7
|
1118
|
January 24, 2023
|
|
Restrain initial structure during equilibration
|
|
2
|
325
|
January 9, 2023
|
|
Repulsive potential between two groups
|
|
3
|
382
|
December 21, 2022
|
|
CgenFF parameters showing high penalty scores
|
|
12
|
1439
|
December 8, 2022
|
|
Domain decomposition with position and angle restraints
|
|
3
|
424
|
June 3, 2022
|