Position restraints and barostat in alchemical free energy double-system/single-box setup
|
|
2
|
77
|
January 23, 2024
|
Imposing restraints between protein and ligand
|
|
10
|
164
|
January 23, 2024
|
How to restrain to some specified waters for OPC model
|
|
0
|
112
|
December 11, 2023
|
Helix unfolding despite position restraints
|
|
0
|
125
|
November 7, 2023
|
In Restraining the Ligand ligand option is not there
|
|
8
|
154
|
November 1, 2023
|
Inverted Flat-bottomed position restraint
|
|
7
|
983
|
September 7, 2023
|
Flat-bottomed position restraints
|
|
0
|
174
|
September 6, 2023
|
Relaxing a harmonic restraint using restraint-lambda
|
|
0
|
213
|
August 22, 2023
|
Scaling position restraints with restraint-lambdas
|
|
9
|
791
|
July 25, 2023
|
Flat Bottom Position Restraints Insufficient information on Manual
|
|
0
|
321
|
June 26, 2023
|
Flat Bottom Position Restraints for membrane pore
|
|
0
|
287
|
June 18, 2023
|
Flat bottomed position restraints not working as intended
|
|
2
|
290
|
June 1, 2023
|
Restraints of 2 different molecules in a simulation with different restraint spring constants
|
|
1
|
160
|
May 27, 2023
|
Restraining two ZN position during minimization, equilibration and MD run
|
|
3
|
399
|
February 20, 2023
|
Is it possible to plot the flat bottom position restrain after an NVT run in gromacs?
|
|
0
|
241
|
February 16, 2023
|
How can I keep Cu fixed in protein during the MD simulation?
|
|
7
|
813
|
January 24, 2023
|
Restrain initial structure during equilibration
|
|
2
|
209
|
January 9, 2023
|
Repulsive potential between two groups
|
|
3
|
288
|
December 21, 2022
|
CgenFF parameters showing high penalty scores
|
|
12
|
784
|
December 8, 2022
|
Domain decomposition with position and angle restraints
|
|
3
|
323
|
June 3, 2022
|
Gromacs not reading POSRES even though it is pointed to in topology
|
|
6
|
892
|
June 2, 2022
|
Gromacs freeze proplems
|
|
2
|
385
|
April 20, 2022
|
Trouble to apply distance restraints
|
|
2
|
1144
|
April 4, 2022
|
Flat-bottomed position restraints for a defined water molecule
|
|
0
|
338
|
January 25, 2022
|
EM chaning peptide coordinated even after using position restrain
|
|
2
|
450
|
October 15, 2021
|
Distance-restraints usage
|
|
1
|
422
|
October 8, 2021
|
Using positional restraints for atoms of the perimeter
|
|
4
|
527
|
August 24, 2021
|
Positional restraint, grompp -r error, restraint coordinates does not match topology
|
|
1
|
754
|
August 19, 2021
|
Position restraints warning in gmx grompp
|
|
3
|
530
|
May 7, 2021
|
Pressure .edr output in equilibrium NVT simulation with position restraints
|
|
4
|
658
|
May 3, 2021
|