I did not try with angular mode as I did not want to override lincs warnings. But yes I see significant conformational transitions with linear mode. Please see this post where I show those transitions Rmsd shots after recentering with trjconv
I did not try with angular mode as I did not want to override lincs warnings. But yes I see significant conformational transitions with linear mode. Please see this post where I show those transitions Rmsd shots after recentering with trjconv