Centering a micelle in a gro file, but it's cut by box boundary

Hi,

I would suggest a similar workflow that I have already described here.
Instead of selecting an atom close to the center of the membrane core, you could try to select an atom close to the center of your micelle (e.g., the last atom of one of your detergents). Make sure that the selected atom does not leave the micelle during the simulation!

Best,
Marius