GROMACS version: 2025.1
GROMACS modification: No
Hello all,
I am looking to process a .pdb file of my unequilibrated system consisting of a POPC membrane, water, and my drug molecule using the pdb2gmx command. I am encountering the error that POPC is not found in the residue topology base despite having the .itp file included in the .top file I have created. Can anyone guide me as to how I can get GROMACS to recognize the residues and their topologies? See the screenshot for more information about the .top file I have made and the error message.
Thank you