GROMACS version: 2022
GROMACS modification: Yes/No
Here post your question
Can any one tell me how do I define the index file for my system where 4 protein chain (repeating )
And 2 DNA chain is present.
Once I solvate the protein then the chain identifier is not seen in the gro file.
Then again trjconv and naming the chain and again index file is made.
And also is there any way that I can make index file after the simulation is completed.
Thank you in advance