GROMACS version:2020
GROMACS modification: Yes/No
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my system is protein-ligand.ı want to calculate rmsf based on backbone of protein.
my graph is
but when I used - res for backbone rmsf
my graph is
what is the problem this graph,
also,g_rmsf -s step5.tpr -f new.xtc -o yeni_rmsf.xvg -oq rmsf.pdb -res
g_rmsf: command not found not working
Can anybody explain me