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This my RMSD,Excuse me, why does this situation occur in this picture?
This my RMSD,Excuse me, why does this situation occur in this picture?
Hi! It looks inverted, i.e. as if you used last frame (confout) as a ref not the first frame (conf).
Hello, yes, but why is that? Generally, this kind of inverted problem doesn’t occur, does it?
It is smth in your command line, looks like you choose later output file for reference
The plot shows that there is more difference between your early sim (high rmsd) and your ref frame than there is between your later sim and the reference frame