Trouble understanding bonded cut-off distance in DD

[alevilla]

Hi,
please have a look at this post. It may be useful

Missing bonded calculation - running simulation on many nodes, rdd option

GROMACS version:2020.2 GROMACS modification: No I have a problem. I try to run my simulation on 864 cores and 36 nodes. I get an error at the beginning of my simulation. WARNING: This run will generate roughly 257397 Mb of data Not all bonded interactions have been properly assigned to the domain decomposition cells A list of missing interactions: Bond of 297000 missing 3191 Angle of 1274400 missing 15691 Ryckaert-Bell. of 1765800 missing 30665 LJ-14 of 1771200 missing 22474 Molec…

Best regards
Alessandra