GROMACS version: 2020
GROMACS modification: Yes (of the manual)
I’m trying to implement a third party tool, but I’m having issues understanding exactly what the indices corresponds to in the Figure 34 of GROMACS manual version 2020.3 (the scheme with virtual sites constructions). In particular, I would very much like to have the legend (i, j, k, l) for black dots on this figure.
Otherwise, a quick description here would totally make my day. But I believe this Figure 34 would be easier to understand with just a legend for black dots.
Thank you very much in advance,
Have a nice day
EDIT: Corrected figure number