|
Why am I getting constant lambda values in constant pH MD for a tripeptide system?
|
|
4
|
137
|
April 23, 2025
|
|
+++ assertion failed: i>0 serial of an atom cannot be zero
|
|
3
|
193
|
April 23, 2025
|
|
Subject: LINCS Warnings During Energy Minimization of PSM Bilayer
|
|
1
|
57
|
April 23, 2025
|
|
Simulations with time step 4 fs using constraints=H-angles
|
|
6
|
242
|
April 23, 2025
|
|
Simulating tripeptide with D-Amino Acids
|
|
0
|
45
|
April 23, 2025
|
|
Is an RMSD value above 0.36 nm (apo-form) and 0.4 to 0.5 nm (complex-form) is acceptable?
|
|
0
|
47
|
April 23, 2025
|
|
Debye Method Implementation
|
|
0
|
68
|
April 22, 2025
|
|
NVT Equilibration problem with interface system
|
|
8
|
155
|
April 22, 2025
|
|
Error in docked complex simulation
|
|
1
|
48
|
April 22, 2025
|
|
CGENFF not working
|
|
1
|
123
|
April 20, 2025
|
|
Generate topol.top file
|
|
0
|
26
|
April 19, 2025
|
|
CHARMM-GUI doesn't support selenocysteine (SEC), which is essential for my protein, and I need help
|
|
0
|
55
|
April 18, 2025
|
|
Charmm36 included non-standard aminoacid
|
|
0
|
41
|
April 18, 2025
|
|
DPPC usage in GROMACS 2023
|
|
3
|
231
|
April 18, 2025
|
|
Error in MCPB.py while parameterizng Ru-Pt complex using Amber 24
|
|
0
|
80
|
April 18, 2025
|
|
GolP FF Access
|
|
0
|
63
|
April 17, 2025
|
|
Equivalent to the old sas2mat
|
|
0
|
44
|
April 17, 2025
|
|
AB-FEP modeling - protein ligand binding energy
|
|
0
|
38
|
April 17, 2025
|
|
GROMACS Result Analysis. Potential Issues?
|
|
7
|
357
|
April 17, 2025
|
|
PBC Artifacts in 20 bp DNA System
|
|
0
|
19
|
April 16, 2025
|
|
16th April - biweekly GROMACS developer meeting - morning edition
|
|
3
|
63
|
April 16, 2025
|
|
Pdb2gmx error: "atom MW is missing in residue HO4" using charmm36-jul2022 with TIP4P water model
|
|
2
|
62
|
April 16, 2025
|
|
Compiling standalone C/C++ analysis scripts for gromacs
|
|
0
|
30
|
April 16, 2025
|
|
Constraints bonds
|
|
0
|
42
|
April 15, 2025
|
|
Error during energy minimization
|
|
4
|
83
|
April 15, 2025
|
|
Installation two GROMACS versions in the same computer
|
|
2
|
1543
|
November 17, 2020
|
|
Gromacs Version
|
|
5
|
893
|
December 6, 2024
|
|
Topology for janus MoSSe
|
|
0
|
92
|
April 14, 2025
|
|
Feature Request——Hope that Acceleration can be calculated with GPU
|
|
0
|
41
|
April 14, 2025
|
|
How to Calculate Coordination Numbers at the Interface and in the Bulk Separately?
|
|
0
|
36
|
April 12, 2025
|