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'topol' does not exist or is not accessible
|
|
2
|
2221
|
December 6, 2025
|
|
Adding KCX residue to residuetypes.dat
|
|
5
|
137
|
December 5, 2025
|
|
Part of the protein structure breaks after Energy Minimization
|
|
0
|
36
|
November 6, 2025
|
|
Distortion of My nucleosome structure while energy minimization
|
|
3
|
46
|
November 6, 2025
|
|
Energy minimization using only CPU (GPU not used) — GROMACS 2025.3 version used on Ubuntu
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|
1
|
121
|
September 15, 2025
|
|
Forces have not converged during energy minimization
|
|
0
|
77
|
May 18, 2025
|
|
Error during energy minimization
|
|
4
|
83
|
April 15, 2025
|
|
How to run a molecule which has O+ in it?
|
|
0
|
39
|
February 12, 2025
|
|
The first step of energy minimization cannot be carried out
|
|
0
|
46
|
January 23, 2025
|
|
Lipid membrane energy minimization error
|
|
0
|
52
|
December 1, 2024
|
|
Error Coordinat not matching gromacs
|
|
32
|
743
|
October 30, 2024
|
|
I tried to perform energy minimization using "http://www.mdtutorials.com/gmx/lysozyme/05_EM.html"
|
|
1
|
50
|
October 5, 2024
|
|
Second minimization
|
|
1
|
41
|
August 28, 2024
|
|
Issue of High Potential Energy on Running Minimization
|
|
22
|
1209
|
August 20, 2024
|
|
Fatal Error topol.tpr file not found
|
|
1
|
162
|
August 16, 2024
|
|
Atomic overlap occurs in energy minimization
|
|
7
|
347
|
August 14, 2024
|
|
Minimization issue
|
|
4
|
90
|
August 8, 2024
|
|
Why membrane rupture durning the energy minimization?
|
|
2
|
68
|
July 29, 2024
|
|
Step 13 and step 28: One or more water molecules can not be settled
|
|
1
|
252
|
July 14, 2024
|
|
I'm getting error as Floating point exception (core dumped) during energy minimization
|
|
11
|
883
|
June 20, 2024
|
|
Hydrogen atom forming more than 1 bond during energy minimization
|
|
3
|
106
|
June 8, 2024
|
|
Why is coulomb SR energy different sign using different forcefields?
|
|
13
|
819
|
April 11, 2024
|
|
Error energy minimization - Martini
|
|
1
|
468
|
March 22, 2024
|
|
Why minimization becomes inf?
|
|
2
|
183
|
March 4, 2024
|
|
Slightly negative energy minimization value
|
|
3
|
390
|
November 21, 2023
|
|
Minimization curve
|
|
2
|
298
|
November 20, 2023
|
|
Error in the EM run
|
|
2
|
379
|
November 14, 2023
|
|
Fatal error: step 22: water molecules starting at atom 7488 can not be settled?
|
|
1
|
320
|
October 4, 2023
|
|
Ligand restraints
|
|
0
|
183
|
July 3, 2023
|
|
Energy minimization works with steepest descent but not conjugate gradient
|
|
3
|
1862
|
June 22, 2023
|