GROMACS version: version 2020.1-Ubuntu-2020.1-1
GROMACS modification: No
I’m currently trying to compute a energy minimization process using GROMACS and this tutorial.
I’ve created the molecule of interest by myself using Avogadro and produced a pdb file. This original pdb file should go thru parameterization for topology generation. I used swissparams, but unfortunately bumped into quite a bit of trouble. So I want to try another parameterization tool, hopefully an online one. Fyi, I’m using CHARMM27 force field. If you can reccomend me one, I would be really thankful.
Also I’m a novice user so if there is a mistake in my understanding, please feel free to correct me. Thanks!