Hello, I am Dharati
Now I am working on GROMACS for only protein. I tried to generate topology file with amber force field but it is showing this type of error
Fatal error:
The residues in the chain LYS1–LEU129 do not have a consistent type. The
first residue has type ‘Protein’, while residue ALA9 is of type ‘Other’.
Either there is a mistake in your chain, or it includes nonstandard residue
names that have not yet been added to the residuetypes.dat file in the GROMACS
library directory. If there are other molecules such as ligands, they should
not have the same chain ID as the adjacent protein chain since it’s a separate
molecule.
So, if you know then can you help me to solve this error???