GROMACS version: 2020.6
GROMACS modification: Yes/No
I am testing Gromacs on 4 GPUs/node. For 100K particle system with a single node, I am getting around ~50% performance boost with -update gpu. I am really excited about the number, but worried about the following warning,
““This run will default to ‘-update gpu’ as requested by the GMX_FORCE_UPDATE_DEFAULT_GPU environment variable. GPU update with domain decomposition lacks substantial testing and should be used with caution.””
I wondering, what type of caution should I take before jumping into using -update gpu ???. If there are any know issues or so?
Runtime settings
export GMX_GPU_DD_COMMS=true
export GMX_GPU_PME_PP_COMMS=true
export GMX_FORCE_UPDATE_DEFAULT_GPU=true
gmx mdrun \
-ntmpi 8 -ntomp 8 \
-pin on \
-nb gpu \
-bonded gpu \
-pme gpu \
-npme 1 \
-deffnm final
Thanks in advance fro your help.
Regards,
Masrul