GROMACS version: 2022.3
GROMACS modification: No
Hello, I just wanted to know, does anybody have a preferred/recommended way of making a nice picture from the hbond analysis, regarding the hbmap.xpm? I mean something worthy of a poster or a publication, to show for example that during a 10ns MD, a certain Serine rotates and alternates between making hydrogen bonds to either its neighbor A, or molecule B, or C…
Not sure if I’m explaining myself right here, but anyways, if somebody has a recommended method or software to integrate the hbmap.xpm and some sort of “header” from the hbond.log or the hbond.ndx, I’d be interested to learn about it
Thanks!