Hello!
In my gro file,
There are: 1- 40 (40 DNA residues)
There are: 1646-1859 (214 Protein residues)
There are: 24913 Water residues
There are: 40 Ion residues
I am using this following command to get pdb files.
gmx trjconv -s _.tpr -f _.xtc -o _.pdb -b -dump
But when I am extracting a pdb file, I am not getting the exact residue numbers. For example I have water molecules with residue numbers 3000, 13000, 23000 in gro file. But in pdb file there are three water molecules with residue number 3000, but the atom numbers are properly converted. What I understood is in pdb file 5 digit residue number is not getting generated.
Please provide me with a solution.
Thank you!