Pdb2gmx long bond warning

User discussions

MagnusL March 21, 2024, 3:33pm 4

Generation of topology for non-standard molecules might help you as well.

Topic		Replies	Views	Activity
ERROR (Warning: Short Bond) User discussions	1	366	June 29, 2020
Pdb file with the bond connection information User discussions forcefield	2	357	January 28, 2024
Error in topology generation regarding using pdb file User discussions	2	37	February 7, 2025
Problem in generating topology file of a polymer User discussions pdb2gmx , mdrun , simulation-setup	9	1355	September 21, 2022
Number of atoms in pdb file not matching topology file User discussions	1	52	September 9, 2024