GROMACS modification: No
Dear Gromacs users,
I have downloaded the gromacs files from ATB (mol= 34570). I could find the pdb file and the rtp file. I do not touch the molecule file (9AZR), which is the same label of the residue. I call both rtp and pdb files with the same name (eventually I tried 9AZR itself). Nevertheless, when running “blindly” gmx pdb2gmx -f 9AZR.pdb, there is an unknown 9AZR residue.
What am I doing wrong? I believe gromacs should read the 9AZR information from the rtp file, but this is not the case.
Thank you for the support