PDB2GMX, structure too large

User discussions
1

GROMACS version:2022
GROMACS modification: No

I want to simulate a filament that extends along the z-axis to the extent that the z-coordinate exceeds the number of fields in a PDB file. How can I handle such a structure?

Best,
Matthew

2

Hi,
Maybe the solution discussed in the post below, works also in your case.

\Alessandra