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In GROMACS 2024.3, I used gmx genion
to neutralize a DNA system with -14 charge using Mg²⁺. I expected 7 Mg ions (since Mg is +2), but the program tried to add 14 ions instead.
gmx genion -s file.tpr -o file_Mg.gro -p file.top -neutral -pname MG
Is this a bug in -neutral
handling for divalent ions, or am I missing something?
Thank you in advance.