The solvent solvent group SOL is not continuous

[sandovalelj]

GROMACS version:
GROMACS modification: Yes/No
Here post your question
Hi!
What would I do, I’ve receiving error ni gmx genion after I choose group of solvent molecules:

fatal error:
The solvent group SOL is not continous: index[489]=5134, index[490]=5234

Can someone please help me.

[alevilla]

Hi,

This post may help you

The solvent group SOL is not continuous

GROMACS version: 2018.1 GROMACS modification: Yes/No Hi, I would like to address a problem during a simulation of protein in ionic liquids. However, I have encountered an error where “The solvent group SOL is not continuous” during the gmx genion command. In this simulation, I plan to retain the water crystals from the protein PDB file. May I know what should I do to solve this error? The error is as below: Group 5 ( MainChain) has 1269 elements Group 6 ( MainChain+Cb) has …

Best regards
Alessandra