Dear all,

Is there any command to calculate and plot viscosity vurses time directly?
I would like to know if Gromac can measure changes in viscoity upon denaturation and unfolding.
If there is, I apperciate your kindness sending me the exact command.

Many thanks in advance


I do not know details on how is normally calculated protein denaturation viscosity, but liquid viscosity can be evaluated using gromacs tools (see details on the formula here Viscosity calculation — GROMACS 2021.1 documentation)

Best regards