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constant-pH gromacs: Installation error
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5
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35
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April 10, 2025
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Methanol molecular dynamics with Amber Force Field
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0
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65
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February 12, 2025
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No default U-B Types
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0
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73
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January 16, 2025
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Inconsistency in user input during MSD calculation in geomacs V.2024?
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1
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44
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October 7, 2024
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Complete Proteasome Simulation
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2
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55
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March 10, 2025
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GPU support disabled using slurm
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2
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38
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February 15, 2025
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Questions About CHARMM36 Parameters for DNA Systems
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2
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42
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January 17, 2025
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Error during energy minimization
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4
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42
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April 15, 2025
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Expanded ensemble: Performance impact of perturbing more atoms
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4
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45
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January 23, 2025
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About MTS with SD integrator
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4
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46
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December 13, 2024
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Error in Restraining the Ligand
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4
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28
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December 4, 2024
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How to create topology file for amorphous silica?
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3
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41
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July 18, 2025
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+++ assertion failed: i>0 serial of an atom cannot be zero
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3
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38
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April 23, 2025
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Source file: src/gromacs/gmxpreprocess/pdb2gmx.cpp Fatal error Glucid Topology
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8
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27
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October 3, 2024
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Correct Setup for Temperature Replica Exchange (T-REMD) in GROMACS Without PLUMED
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1
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51
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February 19, 2025
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CpHMD Simulation Analysis
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1
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47
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February 7, 2025
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Cannot find position restraint file restraint.gro in CHARMM-GUI input files fro GROMACS
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1
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44
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January 22, 2025
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-noappend constant-pH MD
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7
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33
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June 5, 2025
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g_mmpbsa update for latest GROMACS
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0
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65
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June 4, 2025
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11th June, biweekly GROMACS developer meeting - morning edition
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2
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45
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June 24, 2025
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Protein-Lipid system, protein keeps flipping or jumping
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2
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47
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April 25, 2025
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March 5th, biweekly GROMACS developer meeting - afternoon edition
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2
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52
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March 7, 2025
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Continuation in mdp file for umbrella sampling
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2
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42
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January 21, 2025
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Pairwise interactions for [bonds] type 10
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2
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37
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October 1, 2024
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Number of coordinates in solv.gro does not match topology topol.top
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2
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36
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August 12, 2024
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Src/gromacs/ewald/pme_redistribute.cpp (line 305)
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5
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38
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April 12, 2025
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Protein Separation in Asymmetric Lipid Bilayer Simulation – Causes and Solutions?
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5
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31
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March 23, 2025
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Unexpected geometry change when combing `freezegrps` with `constraints` and running MD
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6
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39
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June 19, 2025
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Missing define in .mdp Extracted from .tpr and Restraint Confirmation
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4
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32
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January 10, 2025
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HPC Software Scientist: Mixed Precision in molecular dynamics / GROMACS
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0
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63
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July 7, 2025
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Distance Histogram as a bar graph
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3
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33
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November 12, 2024
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October 2nd, biweekly GROMACS developer meeting
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3
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40
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October 2, 2024
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How to set mpi on gpu cluster
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3
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33
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September 1, 2024
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Getting error as Floating point exception (core dumped) middle main run MD simulation
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1
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46
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January 22, 2025
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Stability for long NVE run
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2
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43
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January 6, 2025
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Van der Waals radius in Gromacs
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0
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60
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September 25, 2024
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Generating topology from gmx x2top
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1
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41
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February 14, 2025
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Minimization and Production Errors - Bonds Rotated More than 30 Degrees
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1
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41
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December 3, 2024
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One or more water molecules can not be settled during pulling
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1
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43
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October 29, 2024
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Gas Phase Minimization
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1
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44
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October 1, 2024
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Osmotic pressure simulations using the pull code
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5
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30
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July 21, 2025
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Interpreting energies and distances
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5
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31
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March 28, 2025
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Computing codes of GROMACS for free
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3
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40
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July 21, 2025
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Description of Gromacs .trr files format
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3
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35
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June 5, 2025
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MD simulated permeability values vs experimental values
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3
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42
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February 10, 2025
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Gmx velacc nonsense?
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4
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33
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March 27, 2025
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Setting up Environment and Obtaining .tpr files
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4
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39
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February 26, 2025
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How to Confirm if SETTLE Algorithm is Applied in TIP4P Water Model Simulation?
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2
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44
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February 4, 2025
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Running simultaneous jobs in a same machine
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2
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40
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January 26, 2025
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Gmx traj looks weird
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2
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40
|
November 1, 2024
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