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Heat capacity is NaN
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0
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39
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October 2, 2025
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NPT parameter
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0
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34
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August 27, 2025
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Advice on handling charge neutrality and dipole issues in MD simulations
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0
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35
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May 19, 2025
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MSD changes with .xtc timestep
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0
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46
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May 17, 2025
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Hydrogen mass repartitioning + multiple time step
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2
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25
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March 7, 2026
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[Errors] Problems during Umbrella Sampling
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1
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31
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February 4, 2026
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Water box elongation
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1
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26
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January 21, 2026
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Making a trajectory by listing frames
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1
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25
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May 28, 2025
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SARS-CoV-2 RNA simulation
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0
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37
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September 8, 2025
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Umberlla sampling
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0
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34
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July 29, 2025
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Simulation replicates and duration
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0
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41
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July 3, 2025
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Negative eigen values while doing NMA of protein
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0
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37
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July 2, 2025
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MD simulations of protein on muscovite mica
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0
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38
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May 13, 2025
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Constraints bonds
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0
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36
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April 15, 2025
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ERROR 1 rvdw-switch must be < rvdw INQUIRY?
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4
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23
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March 5, 2026
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Steered Molecular dynamics of a ligand moving towards bilayer membrane
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1
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26
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March 16, 2026
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Gmx chi Alanine residues output
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1
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26
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November 30, 2025
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Conducting MD simulation on a zinc metalloprotein with 4 zinc ions
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0
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37
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January 7, 2026
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Gromacs output files to .nmd file
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0
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33
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August 15, 2025
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Drug Liposome nano formulation
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0
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31
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July 29, 2025
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How to simulate the specific residues by mentioning their position in the sequence?
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0
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32
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July 3, 2025
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Simulation with a 3 fs timestep
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0
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34
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June 30, 2025
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NPT Equilibration error
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0
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34
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June 19, 2025
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Workflow for incorporating a modified residue into a protein through CHARMM-GUI
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0
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32
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June 12, 2025
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Can we run coarse gain simulation on newer version of Gromacs
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0
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34
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May 26, 2025
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Coarse grained MD on protein-RNA complex
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0
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31
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May 20, 2025
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How to Calculate Coordination Numbers at the Interface and in the Bulk Separately?
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0
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32
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April 12, 2025
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1 particles communicated to PME rank 1 are more than 2/3 times the cut-off out of the domain decompo
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0
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31
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April 9, 2025
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Error running Periodic graphene with mpi threads
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0
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32
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May 29, 2025
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PCA and DCCA analysis
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1
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24
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December 6, 2025
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Question about NB-LIB API in GROMACS 2026.1 – mismatch with manual examples
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5
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27
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April 1, 2026
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Question on Restraint Protocol During Staged Equilibration
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0
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31
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September 27, 2025
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Error in topology conversion from CGenFF
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0
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33
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July 1, 2025
|
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How to create restrained file for sol
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0
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29
|
July 15, 2025
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Segmentation fault(core dumped).......command: gmx mdrun -deffnm NPT
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0
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29
|
May 8, 2025
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AB-FEP modeling - protein ligand binding energy
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0
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32
|
April 17, 2025
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Adding new parameters to charmm ff for sulfur-carbon bond
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0
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30
|
April 10, 2025
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How to fix this?
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3
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26
|
March 4, 2026
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Error problem
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1
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22
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January 29, 2026
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Viscosity calculation for Ionic Liquid
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1
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22
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October 9, 2025
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Simulated annealing of protein-DNA complex
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0
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38
|
February 3, 2026
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Regressiontests/complex tests fail with intelmpi GHROMACS build
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0
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29
|
December 23, 2025
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Zinc problem while running pdb2gmx
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0
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30
|
November 8, 2025
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Part of the protein structure breaks after Energy Minimization
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0
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34
|
November 6, 2025
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Tools for creating initial .gro and combining source files
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0
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29
|
October 8, 2025
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Ionic liquid
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0
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29
|
August 29, 2025
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How to produce topology files for Platinum added metal complex?
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0
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30
|
June 21, 2025
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Topology NON-BONDING parametersproblems
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0
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28
|
May 16, 2025
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Velocity generation for each window in umbrella sampling simulations
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2
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20
|
March 7, 2026
|
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Al-Cl bonds not visible when gro file is opened using vmd
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0
|
28
|
October 13, 2025
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