GROMACS version: 2021.4
GROMACS modification: Yes/No
Here post your question
I used the CGenFF tool to model a PEGylated lipid.
Afterward, I placed the resulting PDB file in SPC water and performed a 2 ns Berendsen and a 50 ns Parrinello-Rahman simulation.
I would now like to evaluate whether the generated model has been stabilized.
What criteria should I use to assess its stability?
Thank you